RchiOBHm_Chr7g0191261

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000392
Physical Location & Seq
Reverse (-)
10035444 .. 10035843
400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17090

Sequence Viewer

Length: 204 bp
ATGCTACTGTTGTTAAGCGCGCTCTATAGAGATAAGTTTCAGGCCAAACAAGGTGGACAAATTGGATGGTGTCTTGTAGCTCAGTATGTTGAGCCTTATTCAGATACAACAGAAGACAAAGCTGCAGCAAAAAGAATGTTAGACTTCGAACTTGGATGGTTCATGGAACCAATAGTATACGGAGATTATCCAAAGATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

67

Amino Acids

7.74

Weight (kDa)

4.81

Isoelectric Point (pI)

25.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 9 - 66 5.7e-10 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 20
AluBI AGCT 2 cut(s) 80, 122
AluI AGCT 2 cut(s) 80, 122
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 122, 125
AspLEI GCGC 2 cut(s) 20, 22
AsuII TTCGAA 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 109, 137
BccI CCATC 2 cut(s) 60, 150
BfmI CTRYAG 2 cut(s) 25, 123
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
BmiI GGNNCC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 147
BseGI GGATG 2 cut(s) 71, 161
BseMII CTCAG 1 cut(s) 95
BsePI GCGCGC 1 cut(s) 18
BseXI GCAGC 2 cut(s) 109, 137
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 44
BsnI GGCC 1 cut(s) 44
Bsp119I TTCGAA 1 cut(s) 147
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 147
BssHII GCGCGC 1 cut(s) 18
BssNAI GTATAC 1 cut(s) 178
Bst1107I GTATAC 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 71, 161
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 2 cut(s) 20, 22
BstSFI CTRYAG 2 cut(s) 25, 123
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 109, 137
BstV2I GAAGAC 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 71, 161
Cac8I GCNNGC 1 cut(s) 20
CfoI GCGC 2 cut(s) 20, 22
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 1 cut(s) 163
CviJI RGCY 4 cut(s) 44, 80, 94, 122
CviKI_1 RGCY 4 cut(s) 44, 80, 94, 122
DdeI CTNAG 1 cut(s) 81
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 27, 87, 164, 178, 200, 202
FatI CATG 1 cut(s) 162
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 2 cut(s) 78, 168
Fsp4HI GCNGC 2 cut(s) 123, 126
GlaI GCGC 2 cut(s) 19, 21
GluI GCNGC 2 cut(s) 123, 126
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 2 cut(s) 20, 22
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 18, 20
HinP1I GCGC 2 cut(s) 18, 20
Hpy166II GTNNAC 2 cut(s) 56, 178
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 56, 178
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 18, 20
LpnPI CCDG 1 cut(s) 26
Lsp1109I GCAGC 2 cut(s) 109, 137
MboII GAAGA 1 cut(s) 125
MluCI AATT 1 cut(s) 60
MseI TTAA 1 cut(s) 14
MvnI CGCG 1 cut(s) 20
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 168
NspV TTCGAA 1 cut(s) 147
PauI GCGCGC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 124, 127
PspN4I GGNNCC 1 cut(s) 168
PstI CTGCAG 1 cut(s) 127
PteI GCGCGC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 123, 126
SetI ASST 3 cut(s) 55, 82, 124
SfcI CTRYAG 2 cut(s) 25, 123
SfuI TTCGAA 1 cut(s) 147
SgeI CNNG 6 cut(s) 31, 53, 62, 86, 164, 175
Sse9I AATT 1 cut(s) 60
TaaI ACNGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 60
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 122, 125
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.