Rh5BG469700

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
74810954 .. 74823340
12387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG469700.1

Sequence Viewer

Length: 258 bp
ATGGCTGCACAAATCAGTTTCCAGGAACTGGAAACTTTGTTTCTTTGCTTTTGGTTGAAGAAGGCTAAACGTTTCCTTCCTCTGCAAACATATAGCTTCAAGCCACCAATGAGTTACAGGAGTAGGAAATTGCAGCTCTATACGTATGTTGAGCCTTATTCAGATACAGAAGAAGACAAAGTTGCAGCAAAAAGAATTTTAGACTCCGAACTTGGATGGTTAGTGACATCCACACTGAACCTAAGTTTACTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.97

Weight (kDa)

8.76

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AclI AACGTT 1 cut(s) 70
AcsI RAATTY 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 58, 100
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 96, 136
AluI AGCT 2 cut(s) 96, 136
AlwNI CAGNNNCTG 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 5, 133, 185
ApoI RAATTY 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 145, 197
BccI CCATC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 23
BisI GCNGC 3 cut(s) 6, 134, 186
BlsI GCNGC 3 cut(s) 7, 135, 187
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 221, 227
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 145, 197
BslI CCNNNNNNNGG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 221, 227
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSNI TACGTA 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 145, 197
BstV2I GAAGAC 1 cut(s) 180
BtsCI GGATG 2 cut(s) 221, 227
BtsIMutI CAGTG 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 28
CviJI RGCY 6 cut(s) 5, 65, 96, 103, 136, 154
CviKI_1 RGCY 6 cut(s) 5, 65, 96, 103, 136, 154
DdeI CTNAG 1 cut(s) 242
Eco105I TACGTA 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 21
FaiI YATR 4 cut(s) 91, 93, 141, 147
Fnu4HI GCNGC 3 cut(s) 6, 134, 186
FokI GGATG 2 cut(s) 214, 228
Fsp4HI GCNGC 3 cut(s) 6, 134, 186
GluI GCNGC 3 cut(s) 6, 134, 186
HinfI GANTC 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 163, 208
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 55, 86
HpyCH4IV ACGT 2 cut(s) 70, 143
HpyCH4V TGCA 4 cut(s) 8, 85, 133, 185
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 70, 143
LpnPI CCDG 4 cut(s) 8, 14, 35, 103
Lsp1109I GCAGC 2 cut(s) 145, 197
MaeII ACGT 2 cut(s) 70, 143
MaeIII GTNAC 2 cut(s) 113, 223
MboII GAAGA 3 cut(s) 70, 182, 185
MluCI AATT 2 cut(s) 128, 195
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 223
PflMI CCANNNNNTGG 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 3 cut(s) 7, 135, 187
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 28
SatI GCNGC 3 cut(s) 6, 134, 186
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 23
SetI ASST 5 cut(s) 73, 98, 138, 146, 243
SgeI CNNG 6 cut(s) 34, 35, 41, 112, 130, 224
SnaBI TACGTA 1 cut(s) 144
Sse9I AATT 2 cut(s) 128, 195
StyD4I CCNGG 1 cut(s) 21
TaiI ACGT 2 cut(s) 73, 146
TasI AATT 2 cut(s) 128, 195
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 5, 133, 185
Tsp45I GTSAC 1 cut(s) 223
TspRI CASTG 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.