Rmu_co8018538.1_g000001

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8018538.1
OG0000392
Physical Location & Seq
Forward (+)
1 .. 533
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8018538.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
accttgcaggctgatggtagcatgttcatcttgtcttatccacaaggtctcaagaaacttttgaagttcatgaagcgaaaataccagagccctaagatctacatttccgaaaatggaattacagaggcaaaggacgataagcgtggacttgatgtagcactgaaggatccacatagaattgaatgtattcttcggcatttgtacatgatcaagcaggccataaagaagggtgtgaacgtcaaaggatatttccactgggctctatttgacgattttgagtggggggaaggctatatcccaaggtacgggctttattatgtcgactacaaggacaatctcaagcgcattcctaaagaatctgcaaagtggctccctaaattcctaaaaggcgaagatgcgatacatgtcaaagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

138

Amino Acids

16.23

Weight (kDa)

9.5

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AclWI GGATC 2 cut(s) 161, 174
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 2 cut(s) 203, 305
AfiI CCNNNNNNNGG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 64, 182
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 161, 174
AoxI GGCC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 345
BamHI GGATCC 1 cut(s) 166
BanII GRGCYC 2 cut(s) 92, 262
BarI GAAGNNNNNNTAC 4 cut(s) 65, 97, 384, 416
BccI CCATC 1 cut(s) 8
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 53
BglII AGATCT 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 168, 371
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 265
BpuEI CTTGAG 2 cut(s) 35, 323
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 260
BshFI GGCC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 92, 262
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 96, 166, 207
BspANI GGCC 1 cut(s) 218
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 168, 371
BspPI GGATC 2 cut(s) 161, 174
BspTNI GGTCTC 1 cut(s) 53
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 3 cut(s) 96, 166, 207
BssT1I CCWWGG 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 9, 216
BstDEI CTNAG 2 cut(s) 93, 414
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 3 cut(s) 99, 169, 210
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 96, 166, 207
BstNSI RCATGY 2 cut(s) 25, 407
BstX2I RGATCY 2 cut(s) 96, 166
BstYI RGATCY 2 cut(s) 96, 166
BsuRI GGCC 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 158, 253
Cac8I GCNNGC 2 cut(s) 9, 216
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 345
Csp6I GTAC 2 cut(s) 202, 304
CviAII CATG 4 cut(s) 22, 70, 205, 404
CviJI RGCY 8 cut(s) 11, 90, 218, 260, 291, 310, 370, 413
CviKI_1 RGCY 8 cut(s) 11, 90, 218, 260, 291, 310, 370, 413
CviQI GTAC 2 cut(s) 202, 304
DdeI CTNAG 2 cut(s) 93, 414
DpnI GATC 3 cut(s) 98, 168, 209
DpnII GATC 3 cut(s) 96, 166, 207
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 92, 262
Eco31I GGTCTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 2 cut(s) 92, 262
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 4 cut(s) 25, 73, 208, 407
FaiI YATR 8 cut(s) 23, 71, 174, 206, 221, 294, 318, 405
FatI CATG 4 cut(s) 21, 69, 204, 403
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 321
FriOI GRGCYC 2 cut(s) 92, 262
GlaI GCGC 1 cut(s) 344
HaeIII GGCC 1 cut(s) 218
HhaI GCGC 1 cut(s) 345
Hin1II CATG 4 cut(s) 25, 73, 208, 407
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 1 cut(s) 356
Hpy166II GTNNAC 3 cut(s) 146, 235, 322
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 52, 70
Hpy8I GTNNAC 3 cut(s) 146, 235, 322
HpyAV CCTTC 3 cut(s) 157, 220, 281
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 7, 362
HpyF3I CTNAG 2 cut(s) 93, 414
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 4 cut(s) 25, 73, 208, 407
HspAI GCGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 96, 166, 207
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 3 cut(s) 98, 200, 241
LweI GCATC 1 cut(s) 385
MaeII ACGT 1 cut(s) 237
MalI GATC 3 cut(s) 98, 168, 209
MboI GATC 3 cut(s) 96, 166, 207
MboII GAAGA 2 cut(s) 182, 404
MflI RGATCY 2 cut(s) 96, 166
MhlI GDGCHC 2 cut(s) 92, 262
MluCI AATT 3 cut(s) 117, 177, 377
MnlI CCTC 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 345
NdeII GATC 3 cut(s) 96, 166, 207
NlaIII CATG 4 cut(s) 25, 73, 208, 407
NlaIV GGNNCC 2 cut(s) 168, 371
NspI RCATGY 2 cut(s) 25, 407
PagI TCATGA 1 cut(s) 69
PciI ACATGT 1 cut(s) 403
PctI GAATGC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 356
PscI ACATGT 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 168, 371
PsuI RGATCY 2 cut(s) 96, 166
RsaI GTAC 2 cut(s) 203, 305
RsaNI GTAC 2 cut(s) 202, 304
SalI GTCGAC 1 cut(s) 320
Sau3AI GATC 3 cut(s) 96, 166, 207
SduI GDGCHC 2 cut(s) 92, 262
SetI ASST 4 cut(s) 49, 240, 305, 415
SfaNI GCATC 1 cut(s) 385
SmlI CTYRAG 2 cut(s) 50, 338
SmoI CTYRAG 2 cut(s) 50, 338
Sse9I AATT 3 cut(s) 117, 177, 377
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 117, 177, 377
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 2 cut(s) 165, 260
TspDTI ATGAA 3 cut(s) 16, 58, 86
TspRI CASTG 2 cut(s) 165, 260
XapI RAATTY 1 cut(s) 377
XceI RCATGY 2 cut(s) 25, 407
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.