FvH4_5g07832

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000392
Physical Location & Seq
Forward (+)
4564042 .. 4565498
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07832.t1

Sequence Viewer

Length: 834 bp
ATGGGTTATGATCTGGGGGTTGCTCCACCAGGCAGGTGTTCAGTACGAGCACCACAAAACAAGATTGAATGCAAAGATGGTAATTCATCTACTGAGCCTTATATTGTGACCCATAACTTGATCCTCTCTCATGCTACTGTTGTTGAGCTCTATAGAGAGAACTTTCAGTCTAAACAAGGTGGAAAAATTGGATGGTCTCTTGTTGGTCAGTATGTTGAGCCTTATTCAGATGCAGCAGAAGACAAAGCTGCAGCGAAATCGAAATTGGATGTATATGGGGATTATCCAAAGATTATGAGAGATTTGGTCAACGAAAGACGAACTAGTTTCACTGAAGAAGAGAAAAACTTGATCAAGGGATCCTTCGATTTCATTGGCGTCAACTATTATACCACAAGATATGGTAAAAATGCTCCAGCAAGTCAAGCTGAACCATTGAGTTATCACAGTGACTCTTTGGCTACATCAACTGAAACAAATGCAAATGGAGTCTTAATCGGTCCTCATGTTGATGGAAGCTTCTACATCTTCTCATATCCGGAAGGTCTTCAGAAGCTTTTGGAGTTCATGAAGCAAAACTACCAAAGTCCTACAATCTACATTACTGAAAATGGAATCACAGAGGCTAGGAATGACACGCTTGCACTCGATGCGCAACTCAGGGATCCTCATAGAATCGAATGCATTCTTCGACTCTTGTACAGGATCAAGATGGCAATGAAGAATGGGGTGAATGTCAAAGGGTATTTCCACTGGGCACTATTCGATAACTTTGAGTGGGCACAAGGCTATACTCCAAGTGGTTCGAGTGTTGCCATCAGCAACATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

278

Amino Acids

31.04

Weight (kDa)

5.9

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 2 - 265 9.5e-48 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 24
Acc16I TGCGCA 1 cut(s) 654
Acc36I ACCTGC 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 538
AclWI GGATC 6 cut(s) 115, 354, 367, 659, 672, 713
AcuI CTGAAG 2 cut(s) 354, 533
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 2 cut(s) 45, 701
AgsI TTSAA 1 cut(s) 68
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 5 cut(s) 148, 248, 428, 519, 556
AluI AGCT 5 cut(s) 148, 248, 428, 519, 556
Alw21I GWGCWC 2 cut(s) 52, 150
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 6 cut(s) 115, 354, 367, 659, 672, 713
Aor13HI TCCGGA 1 cut(s) 538
ApeKI GCWGC 3 cut(s) 233, 248, 251
Asp700I GAANNNNTTC 2 cut(s) 546, 684
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 742
AvaII GGWCC 1 cut(s) 500
BaeGI GKGCMC 2 cut(s) 760, 784
BamHI GGATCC 2 cut(s) 359, 664
BanII GRGCYC 1 cut(s) 150
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbsI GAAGAC 2 cut(s) 246, 539
Bbv12I GWGCWC 2 cut(s) 52, 150
BbvI GCAGC 3 cut(s) 235, 245, 263
BccI CCATC 5 cut(s) 71, 186, 506, 706, 824
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 324, 627
BfmI CTRYAG 2 cut(s) 151, 249
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 3 cut(s) 234, 249, 252
BlsI GCNGC 3 cut(s) 235, 250, 253
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 2 cut(s) 361, 666
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 2 cut(s) 220, 640
BmuI ACTGGG 1 cut(s) 763
BpiI GAAGAC 2 cut(s) 246, 539
BpmI CTGGAG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 723
BseAI TCCGGA 1 cut(s) 538
BseBI CCWGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 197, 274
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 2 cut(s) 84, 673
BseNI ACTGG 1 cut(s) 758
BseSI GKGCMC 2 cut(s) 760, 784
BseXI GCAGC 3 cut(s) 235, 245, 263
BsiHKAI GWGCWC 2 cut(s) 52, 150
BsiSI CCGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 201
BsmI GAATGC 3 cut(s) 74, 684, 686
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 4 cut(s) 52, 150, 760, 784
Bsp13I TCCGGA 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 6 cut(s) 10, 120, 351, 359, 664, 705
BspCNI CTCAG 2 cut(s) 85, 672
BspEI TCCGGA 1 cut(s) 538
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 361, 666
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 6 cut(s) 115, 354, 367, 659, 672, 713
BspTNI GGTCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 1 cut(s) 758
BssMI GATC 6 cut(s) 10, 120, 351, 359, 664, 705
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 139, 449
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 650
BstAUI TGTACA 1 cut(s) 699
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 2 cut(s) 93, 659
BstF5I GGATG 2 cut(s) 197, 274
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 6 cut(s) 13, 123, 354, 362, 667, 708
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 6 cut(s) 10, 120, 351, 359, 664, 705
BstMWI GCNNNNNNNGC 2 cut(s) 425, 650
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 2 cut(s) 151, 249
BstSLI GKGCMC 2 cut(s) 760, 784
BstV1I GCAGC 3 cut(s) 235, 245, 263
BstV2I GAAGAC 2 cut(s) 246, 539
BstX2I RGATCY 2 cut(s) 359, 664
BstYI RGATCY 2 cut(s) 359, 664
BtsCI GGATG 2 cut(s) 197, 274
BtsIMutI CAGTG 3 cut(s) 330, 454, 751
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 642
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 44, 700
CviAII CATG 3 cut(s) 131, 506, 568
CviQI GTAC 2 cut(s) 44, 700
DdeI CTNAG 2 cut(s) 93, 659
DpnI GATC 6 cut(s) 12, 122, 353, 361, 666, 707
DpnII GATC 6 cut(s) 10, 120, 351, 359, 664, 705
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 354, 533
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 686
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 3 cut(s) 134, 509, 571
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 3 cut(s) 130, 505, 567
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 234, 249, 252
FokI GGATG 2 cut(s) 204, 281
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 234, 249, 252
FspBI CTAG 2 cut(s) 324, 627
FspI TGCGCA 1 cut(s) 654
GlaI GCGC 1 cut(s) 654
GluI GCNGC 3 cut(s) 234, 249, 252
GsuI CTGGAG 1 cut(s) 399
HapII CCGG 1 cut(s) 539
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 3 cut(s) 134, 509, 571
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 2 cut(s) 310, 382
HindII GTYRAC 2 cut(s) 310, 382
HindIII AAGCTT 2 cut(s) 517, 554
HinfI GANTC 5 cut(s) 452, 489, 615, 675, 693
HpaII CCGG 1 cut(s) 539
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 2 cut(s) 310, 382
Hpy188I TCNGA 2 cut(s) 229, 552
Hpy188III TCNNGA 3 cut(s) 539, 568, 709
Hpy8I GTNNAC 2 cut(s) 310, 382
HpyAV CCTTC 2 cut(s) 373, 536
HpyCH4III ACNGT 2 cut(s) 139, 449
HpyCH4V TGCA 6 cut(s) 72, 233, 251, 482, 644, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 650
HpyF3I CTNAG 2 cut(s) 93, 659
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 3 cut(s) 134, 509, 571
HspAI GCGC 1 cut(s) 653
Kpn2I TCCGGA 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 6 cut(s) 10, 120, 351, 359, 664, 705
LmnI GCTCC 2 cut(s) 28, 418
LpnPI CCDG 8 cut(s) 15, 19, 42, 429, 552, 646, 688, 739
Lsp1109I GCAGC 3 cut(s) 235, 245, 263
LweI GCATC 2 cut(s) 220, 640
MaeI CTAG 2 cut(s) 324, 627
MaeIII GTNAC 2 cut(s) 106, 449
MalI GATC 6 cut(s) 12, 122, 353, 361, 666, 707
MboI GATC 6 cut(s) 10, 120, 351, 359, 664, 705
MboII GAAGA 7 cut(s) 251, 347, 350, 520, 539, 680, 733
MflI RGATCY 2 cut(s) 359, 664
MhlI GDGCHC 4 cut(s) 52, 150, 760, 784
MluCI AATT 3 cut(s) 82, 186, 263
MlyI GAGTC 3 cut(s) 446, 498, 687
MnlI CCTC 4 cut(s) 134, 513, 616, 678
Mph1103I ATGCAT 1 cut(s) 686
MroI TCCGGA 1 cut(s) 538
MroXI GAANNNNTTC 2 cut(s) 546, 684
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 3 cut(s) 74, 684, 686
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 425, 650
NdeII GATC 6 cut(s) 10, 120, 351, 359, 664, 705
NlaIII CATG 3 cut(s) 134, 509, 571
NlaIV GGNNCC 2 cut(s) 361, 666
NmuCI GTSAC 2 cut(s) 106, 449
NsbI TGCGCA 1 cut(s) 654
NsiI ATGCAT 1 cut(s) 686
PagI TCATGA 1 cut(s) 567
PaqCI CACCTGC 1 cut(s) 24
PctI GAATGC 3 cut(s) 74, 684, 686
PdmI GAANNNNTTC 2 cut(s) 546, 684
PfeI GAWTC 2 cut(s) 615, 675
PkrI GCNGC 3 cut(s) 235, 250, 253
PleI GAGTC 3 cut(s) 446, 497, 687
PpsI GAGTC 3 cut(s) 446, 497, 687
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 361, 666
PspPI GGNCC 1 cut(s) 500
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 2 cut(s) 359, 664
RsaI GTAC 2 cut(s) 45, 701
RsaNI GTAC 2 cut(s) 44, 700
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 3 cut(s) 234, 249, 252
Sau3AI GATC 6 cut(s) 10, 120, 351, 359, 664, 705
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 3 cut(s) 446, 498, 687
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 4 cut(s) 52, 150, 760, 784
SetI ASST 8 cut(s) 38, 150, 181, 250, 430, 521, 547, 558
SfaNI GCATC 2 cut(s) 220, 640
SfcI CTRYAG 2 cut(s) 151, 249
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 510
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 3 cut(s) 82, 186, 263
SspMI CTAG 2 cut(s) 324, 627
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 139, 449
TaqI TCGA 7 cut(s) 260, 366, 648, 678, 691, 765, 806
TaqII GACCGA 1 cut(s) 488
TasI AATT 3 cut(s) 82, 186, 263
TatI WGTACW 1 cut(s) 699
TfiI GAWTC 2 cut(s) 615, 675
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 3 cut(s) 337, 454, 758
TseFI GTSAC 2 cut(s) 106, 449
TseI GCWGC 3 cut(s) 233, 248, 251
Tsp45I GTSAC 2 cut(s) 106, 449
TspDTI ATGAA 5 cut(s) 75, 361, 556, 584, 734
TspRI CASTG 3 cut(s) 337, 454, 758
VpaK11BI GGWCC 1 cut(s) 500
XmnI GAANNNNTTC 2 cut(s) 546, 684
XspI CTAG 2 cut(s) 324, 627
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.