Rh5DG483000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
76070560 .. 76070877
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG483000.1

Sequence Viewer

Length: 318 bp
ATGAAGATGAAGGGAATCGGTTCCATAGACAATGGTAATATATCTTCTCAGGGCAAGACAAAAATTGCTGCACAAAACAGTTTCCAGGAACTGGAAACTTTGTTTCTTTGCTCTTGGTTGAAGAAGGCCAAACGTTTTCTTCCTCTGCAAACATACAGCTTCAAGCCACCAATGAGTTACAGGAGTAGGAAATTGCAGCTCTATACGGTTACTAATACAATAGACTATTGCTTATTCGTTCATTATAGTGCAATAGAGGAACATATTCATGTCCAACTTCTTATTATCAACAAACATGTAATACTTGTACGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.16

Weight (kDa)

9.74

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AclI AACGTT 1 cut(s) 133
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 2 cut(s) 121, 163
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 3 cut(s) 159, 199, 315
AluI AGCT 3 cut(s) 159, 199, 315
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 68, 196
Asp700I GAANNNNTTC 2 cut(s) 19, 264
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
BbvI GCAGC 2 cut(s) 55, 208
BciT130I CCWGG 1 cut(s) 86
BisI GCNGC 2 cut(s) 69, 197
BlsI GCNGC 2 cut(s) 70, 198
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 55, 208
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 1 cut(s) 128
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 80, 208
BstBAI YACGTR 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 48
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 84
BstSNI TACGTA 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 55, 208
BsuRI GGCC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 91
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 269, 296
CviJI RGCY 5 cut(s) 128, 159, 166, 199, 315
CviKI_1 RGCY 5 cut(s) 128, 159, 166, 199, 315
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 48
Eco105I TACGTA 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 272, 299
FaiI YATR 8 cut(s) 26, 41, 154, 204, 246, 264, 270, 297
FatI CATG 2 cut(s) 268, 295
Fnu4HI GCNGC 2 cut(s) 69, 197
Fsp4HI GCNGC 2 cut(s) 69, 197
GluI GCNGC 2 cut(s) 69, 197
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 2 cut(s) 272, 299
HinfI GANTC 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 4, 118
HpyCH4III ACNGT 2 cut(s) 80, 208
HpyCH4IV ACGT 2 cut(s) 133, 310
HpyCH4V TGCA 4 cut(s) 71, 148, 196, 251
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 133, 310
Hsp92II CATG 2 cut(s) 272, 299
LpnPI CCDG 5 cut(s) 35, 71, 77, 98, 166
Lsp1109I GCAGC 2 cut(s) 55, 208
MaeII ACGT 2 cut(s) 133, 310
MaeIII GTNAC 2 cut(s) 176, 208
MboII GAAGA 4 cut(s) 16, 36, 131, 133
MluCI AATT 2 cut(s) 63, 191
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 2 cut(s) 153, 250
MroXI GAANNNNTTC 2 cut(s) 19, 264
MslI CAYNNNNRTG 2 cut(s) 246, 267
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NlaIII CATG 2 cut(s) 272, 299
NlaIV GGNNCC 1 cut(s) 22
NspI RCATGY 1 cut(s) 299
PciI ACATGT 1 cut(s) 295
PdmI GAANNNNTTC 2 cut(s) 19, 264
PfeI GAWTC 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 2 cut(s) 70, 198
Ppu21I YACGTR 1 cut(s) 311
PscI ACATGT 1 cut(s) 295
Psp1406I AACGTT 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 2 cut(s) 246, 267
SatI GCNGC 2 cut(s) 69, 197
ScrFI CCNGG 1 cut(s) 86
SetI ASST 5 cut(s) 136, 161, 201, 313, 317
SmiMI CAYNNNNRTG 2 cut(s) 246, 267
SnaBI TACGTA 1 cut(s) 311
Sse9I AATT 2 cut(s) 63, 191
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 80, 208
TaiI ACGT 2 cut(s) 136, 313
TasI AATT 2 cut(s) 63, 191
TfiI GAWTC 1 cut(s) 15
TseI GCWGC 2 cut(s) 68, 196
TspDTI ATGAA 4 cut(s) 17, 23, 230, 257
Van91I CCANNNNNTGG 1 cut(s) 91
XceI RCATGY 1 cut(s) 299
XmnI GAANNNNTTC 2 cut(s) 19, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.