Rorug06G0505100

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
62064900 .. 62069009
4110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0505100.1

Sequence Viewer

Length: 957 bp
ATGGCGGCGACGGGGCAAGTCGCCGGAGGCCTGACGTCGTACGATCGCCAGGTTTTGACTGCGGTCAATGCCGGAGCGGCCAGCCTCTCCTTCGTCGGCTCCGGCTTCATCGTCCTCTGCTACGTCCTCTTCAAAGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTTCTACCTCGCTCTCTCCGACATGCTTTGTAGCTTCTTCAGCATGGTTGGGGATCCATCCAGAGGATTTTTCTGTTACTCGCATGGCTACAGCACTCATTTCTTCTGTGTTGCGTCGTTCCTGTGGACTACGACGATTGCTTTTACTCTTCACCGTACTGTTGTTAAACACAAAACTGATGTGGAAGATTTGGAGGCAATGTTTCATTTGTATGTTTGGGGGACTTCACTAGTTGTGACAGTTGTGCGATCTATTGGTAATAACCATAGTCACCTAGGTACATGGTGTTGGTCGCAGTCTGGGCGTACAGGAAAGGCACTTCACTTTGTAACCTTTTATATGCCACTCTGGGGTGCAATTCTTTACAATGGTTTTACGTACTTTCAAGTTATACGCATGCTGAACAATGCAAGGCGTATGGCAGGTAGCATATCCGACCGCCCTTACCAATCAGATGCCAGAGCAGAAACAAAGGCTTTGAACAGGTGGGGGTACTACCCGCTCATCCTGATAGGATCATGGGCTTTTGGCACCATCAACCGCATTCATGACTTTATTGAACCGGATCATAAAATATTTTGGCTCTCAGTTCTTGATGTTGGGACAGCTGCACTCATGGGTCTGTTCAATTCAATAGCCTATGGCTTGAATTCCTCAGTTCGACGGGCAATACAAGAAAGATTGGATCTGTTCTGGCCAGACAGGCTTCGAAGATGGTTCCCCAGTTCAAGGCTTAGAAACCAACATGAAGAGAGTGAACTAGCATCACTAAAGATTCAAGATCAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

36.26

Weight (kDa)

9.3

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dicty_CAR PF05462 26 - 273 1.3e-13 Slime mold cyclic AMP receptor
7tm_2 PF00002 27 - 193 1.3e-07 7 transmembrane receptor (Secretin family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 695
AccBSI CCGCTC 2 cut(s) 77, 667
AciI CCGC 7 cut(s) 5, 62, 77, 142, 604, 665, 706
AclWI GGATC 5 cut(s) 212, 225, 688, 738, 858
AcoI YGGCCR 2 cut(s) 78, 860
AcsI RAATTY 1 cut(s) 814
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 6 cut(s) 41, 322, 445, 472, 545, 659
AfiI CCNNNNNNNGG 3 cut(s) 227, 515, 894
AhlI ACTAGT 1 cut(s) 394
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 4 cut(s) 139, 160, 198, 773
AluI AGCT 4 cut(s) 139, 160, 198, 773
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 5 cut(s) 212, 225, 688, 738, 858
AoxI GGCC 3 cut(s) 28, 78, 860
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 1 cut(s) 814
AspA2I CCTAGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 308, 428
AsuII TTCGAA 1 cut(s) 874
AvrII CCTAGG 1 cut(s) 439
BalI TGGCCA 1 cut(s) 862
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 760
BccI CCATC 3 cut(s) 229, 707, 873
BciT130I CCWGG 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 394
BfaI CTAG 4 cut(s) 395, 440, 926, 955
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 578
BglI GCCNNNNNGGC 2 cut(s) 77, 868
BisI GCNGC 3 cut(s) 6, 78, 774
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 3 cut(s) 7, 79, 775
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 4 cut(s) 100, 219, 697, 884
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 2 cut(s) 610, 938
BmuI ACTGGG 1 cut(s) 882
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 157
Bpu14I TTCGAA 1 cut(s) 874
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 727
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 515, 894
Bse1I ACTGG 1 cut(s) 888
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 221, 669
BseLI CCNNNNNNNGG 3 cut(s) 227, 515, 894
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 765, 834
BseNI ACTGG 1 cut(s) 888
BseXI GCAGC 1 cut(s) 760
BsgI GTGCAG 1 cut(s) 759
Bsh1285I CGRYCG 2 cut(s) 46, 604
BshFI GGCC 3 cut(s) 30, 80, 862
BshNI GGYRCC 1 cut(s) 695
BsiEI CGRYCG 2 cut(s) 46, 604
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 4 cut(s) 24, 72, 102, 728
BsiWI CGTACG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 400, 781
BslI CCNNNNNNNGG 3 cut(s) 227, 515, 894
BsmFI GGGAC 2 cut(s) 400, 781
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 3 cut(s) 30, 80, 862
Bsp119I TTCGAA 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
BspACI CCGC 7 cut(s) 5, 62, 77, 142, 604, 665, 706
BspANI GGCC 3 cut(s) 30, 80, 862
BspCNI CTCAG 2 cut(s) 764, 833
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 100, 219, 697, 884
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 5 cut(s) 212, 225, 688, 738, 858
BspT104I TTCGAA 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 695
BsrBI CCGCTC 2 cut(s) 77, 667
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 888
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 320, 325, 406
Bst6I CTCTTC 3 cut(s) 134, 318, 909
BstACI GRCGYC 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 874
BstC8I GCNNGC 2 cut(s) 82, 563
BstDEI CTNAG 3 cut(s) 751, 820, 899
BstF5I GGATG 2 cut(s) 221, 669
BstKTI GATC 7 cut(s) 46, 220, 416, 683, 733, 853, 949
BstMBI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
BstMCI CGRYCG 2 cut(s) 46, 604
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 204, 466, 868
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 190, 565
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 253
BstSNI TACGTA 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 760
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 217, 850
BstYI RGATCY 2 cut(s) 217, 850
BsuRI GGCC 3 cut(s) 30, 80, 862
BtsCI GGATG 2 cut(s) 221, 669
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 2 cut(s) 82, 563
CciI TCATGA 1 cut(s) 712
CseI GACGC 1 cut(s) 267
Csp6I GTAC 6 cut(s) 40, 321, 444, 471, 544, 658
CviAII CATG 9 cut(s) 187, 208, 248, 447, 562, 684, 713, 781, 911
CviQI GTAC 6 cut(s) 40, 321, 444, 471, 544, 658
DdeI CTNAG 3 cut(s) 751, 820, 899
DpnI GATC 7 cut(s) 45, 219, 415, 682, 732, 852, 948
DpnII GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
EaeI YGGCCR 2 cut(s) 78, 860
Eam1104I CTCTTC 3 cut(s) 134, 318, 909
EarI CTCTTC 3 cut(s) 134, 318, 909
Ecl136II GAGCTC 1 cut(s) 139
Eco105I TACGTA 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 9 cut(s) 190, 211, 251, 450, 565, 687, 716, 784, 914
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 149, 181
FaqI GGGAC 2 cut(s) 400, 781
FatI CATG 9 cut(s) 186, 207, 247, 446, 561, 683, 712, 780, 910
FauI CCCGC 1 cut(s) 672
Fnu4HI GCNGC 3 cut(s) 6, 78, 774
FokI GGATG 2 cut(s) 208, 656
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 6, 78, 774
FspBI CTAG 4 cut(s) 395, 440, 926, 955
GluI GCNGC 3 cut(s) 6, 78, 774
HaeIII GGCC 3 cut(s) 30, 80, 862
HapII CCGG 4 cut(s) 24, 72, 102, 728
HgaI GACGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 9 cut(s) 190, 211, 251, 450, 565, 687, 716, 784, 914
HinfI GANTC 1 cut(s) 940
HpaII CCGG 4 cut(s) 24, 72, 102, 728
HphI GGTGA 2 cut(s) 308, 428
Hpy166II GTNNAC 2 cut(s) 291, 923
Hpy188I TCNGA 3 cut(s) 184, 601, 619
Hpy188III TCNNGA 5 cut(s) 225, 673, 713, 758, 944
Hpy8I GTNNAC 2 cut(s) 291, 923
Hpy99I CGWCG 6 cut(s) 13, 40, 98, 283, 301, 831
HpyAV CCTTC 2 cut(s) 100, 163
HpyCH4III ACNGT 3 cut(s) 320, 325, 406
HpyCH4IV ACGT 3 cut(s) 35, 123, 542
HpyCH4V TGCA 3 cut(s) 521, 575, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 204, 466, 868
HpyF3I CTNAG 3 cut(s) 751, 820, 899
HpySE526I ACGT 3 cut(s) 35, 123, 542
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 9 cut(s) 190, 211, 251, 450, 565, 687, 716, 784, 914
Kzo9I GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
LmnI GCTCC 3 cut(s) 74, 104, 144
Lsp1109I GCAGC 1 cut(s) 760
LweI GCATC 2 cut(s) 610, 938
MaeI CTAG 4 cut(s) 395, 440, 926, 955
MaeII ACGT 3 cut(s) 35, 123, 542
MaeIII GTNAC 4 cut(s) 239, 400, 434, 493
MalI GATC 7 cut(s) 45, 219, 415, 682, 732, 852, 948
MbiI CCGCTC 2 cut(s) 77, 667
MboI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
MboII GAAGA 8 cut(s) 121, 157, 193, 259, 305, 362, 888, 926
MflI RGATCY 2 cut(s) 217, 850
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 862
MluCI AATT 3 cut(s) 522, 793, 814
MluNI TGGCCA 1 cut(s) 862
MmeI TCCRAC 2 cut(s) 207, 624
MnlI CCTC 8 cut(s) 20, 95, 125, 137, 182, 221, 352, 829
Mox20I TGGCCA 1 cut(s) 862
MscI TGGCCA 1 cut(s) 862
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 862
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 4 cut(s) 24, 72, 102, 728
MspR9I CCNGG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 204, 466, 868
NdeII GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
NlaIII CATG 9 cut(s) 190, 211, 251, 450, 565, 687, 716, 784, 914
NlaIV GGNNCC 4 cut(s) 100, 219, 697, 884
NmuCI GTSAC 2 cut(s) 400, 434
NspI RCATGY 2 cut(s) 190, 565
NspV TTCGAA 1 cut(s) 874
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 712
PceI AGGCCT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 940
Pfl23II CGTACG 1 cut(s) 39
PkrI GCNGC 3 cut(s) 7, 79, 775
Ple19I CGATCG 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 543
PshAI GACNNNNGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 4 cut(s) 100, 219, 697, 884
PsuI RGATCY 2 cut(s) 217, 850
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 6 cut(s) 41, 322, 445, 472, 545, 659
RsaNI GTAC 6 cut(s) 40, 321, 444, 471, 544, 658
RseI CAYNNNNRTG 1 cut(s) 375
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 3 cut(s) 6, 78, 774
Sau3AI GATC 7 cut(s) 43, 217, 413, 680, 730, 850, 946
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 2 cut(s) 610, 938
SfcI CTRYAG 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 874
SmiMI CAYNNNNRTG 1 cut(s) 375
SnaBI TACGTA 1 cut(s) 543
SpeI ACTAGT 1 cut(s) 394
SphI GCATGC 1 cut(s) 565
Sse9I AATT 3 cut(s) 522, 793, 814
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 7 cut(s) 5, 62, 77, 142, 604, 665, 706
SspI AATATT 1 cut(s) 741
SspMI CTAG 4 cut(s) 395, 440, 926, 955
SstI GAGCTC 1 cut(s) 141
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 3 cut(s) 320, 325, 406
TaiI ACGT 3 cut(s) 38, 126, 545
TaqI TCGA 2 cut(s) 826, 874
TasI AATT 3 cut(s) 522, 793, 814
TauI GCSGC 2 cut(s) 8, 80
TfiI GAWTC 1 cut(s) 940
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 2 cut(s) 400, 434
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 2 cut(s) 400, 434
TspDTI ATGAA 4 cut(s) 97, 359, 701, 927
XapI RAATTY 1 cut(s) 814
XceI RCATGY 2 cut(s) 190, 565
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 4 cut(s) 395, 440, 926, 955
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.