Rh2AG107900

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000392
Physical Location & Seq
Reverse (-)
9541287 .. 9541692
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG107900.1

Sequence Viewer

Length: 318 bp
ATGGCTTCATCAACCAAGTTTTTCTATGTTCTGGTTGCGGTTTGTGCCATCATCGCTTCCATTGCTTGCTGCACTTCCCGGGCTACTATTCCAGATTCAGATGGTGTGGCAGCGAATTTGACAGCCGGGGGATTCACTTCCGGATTGAATTTATACAGTAGTGTATTTCTCGAAGAATTGGATGTTACCAGATCAGACTTCCCAGCTGATTTTACTTTTGGAGTCGCTACATCTGCTGGACAGACTGAAGGGTCAGCCAGAGAAGGAGGGAGAGGACCAAGTACATGGGATCATCGCGTTGATATACTGCCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

105

Amino Acids

10.87

Weight (kDa)

4.46

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 65 - 98 6.2e-09 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccII CGCG 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 2 cut(s) 115, 148
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 283
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 69, 110
ApoI RAATTY 2 cut(s) 115, 148
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 3 cut(s) 79, 80, 127
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 56, 122
BccI CCATC 2 cut(s) 56, 95
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 3 cut(s) 79, 80, 127
BisI GCNGC 2 cut(s) 70, 111
BlsI GCNGC 2 cut(s) 71, 112
Bme1390I CCNGG 4 cut(s) 79, 80, 127, 312
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 4 cut(s) 79, 80, 127, 312
BpuMI CCSGG 3 cut(s) 79, 80, 127
BsaJI CCNNGG 2 cut(s) 78, 126
BsaWI WCCGGW 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 78, 126
BseGI GGATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 56, 122
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 3 cut(s) 79, 126, 141
BsoBI CYCGRG 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 2 cut(s) 191, 289
BspACI CCGC 1 cut(s) 38
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 297
BspPI GGATC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 78, 126
BssMI GATC 2 cut(s) 191, 289
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 2 cut(s) 194, 292
BstMBI GATC 2 cut(s) 191, 289
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 62, 233
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 4 cut(s) 77, 78, 125, 310
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 56, 122
BstXI CCANNNNNNTGG 1 cut(s) 285
BtgZI GCGATG 2 cut(s) 37, 278
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 275
Cfr9I CCCGGG 1 cut(s) 78
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 285
CviJI RGCY 5 cut(s) 5, 83, 125, 206, 257
CviKI_1 RGCY 5 cut(s) 5, 83, 125, 206, 257
CviQI GTAC 1 cut(s) 282
DpnI GATC 2 cut(s) 193, 291
DpnII GATC 2 cut(s) 191, 289
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 288
FaiI YATR 4 cut(s) 27, 154, 286, 305
FatI CATG 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 70, 111
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 70, 111
GluI GCNGC 2 cut(s) 70, 111
GsaI CCCAGC 1 cut(s) 206
HapII CCGG 3 cut(s) 79, 126, 141
Hin1II CATG 1 cut(s) 288
HinfI GANTC 3 cut(s) 95, 132, 222
HpaII CCGG 3 cut(s) 79, 126, 141
Hpy188I TCNGA 2 cut(s) 100, 196
Hpy188III TCNNGA 3 cut(s) 92, 141, 170
HpyAV CCTTC 2 cut(s) 242, 257
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 62, 233
Hsp92II CATG 1 cut(s) 288
Kpn2I TCCGGA 1 cut(s) 140
Kzo9I GATC 2 cut(s) 191, 289
Lsp1109I GCAGC 2 cut(s) 56, 122
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 193, 291
MboI GATC 2 cut(s) 191, 289
MboII GAAGA 1 cut(s) 185
MluCI AATT 3 cut(s) 115, 148, 176
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 2 cut(s) 260, 266
MroI TCCGGA 1 cut(s) 140
MseI TTAA 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 79, 126, 141
MspR9I CCNGG 4 cut(s) 79, 80, 127, 312
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 62, 233
NciI CCSGG 3 cut(s) 79, 80, 127
NdeII GATC 2 cut(s) 191, 289
NlaIII CATG 1 cut(s) 288
PfeI GAWTC 2 cut(s) 95, 132
PkrI GCNGC 2 cut(s) 71, 112
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 310
PspPI GGNCC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 2 cut(s) 70, 111
Sau3AI GATC 2 cut(s) 191, 289
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 4 cut(s) 79, 80, 127, 312
SetI ASST 2 cut(s) 208, 316
SinI GGWCC 1 cut(s) 275
SmaI CCCGGG 1 cut(s) 80
Sse9I AATT 3 cut(s) 115, 148, 176
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 4 cut(s) 77, 78, 125, 310
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 115, 148, 176
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 2 cut(s) 95, 132
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseI GCWGC 2 cut(s) 69, 110
TspMI CCCGGG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 115, 148
XmaI CCCGGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.