FvH4_5g07831

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000392
Physical Location & Seq
Forward (+)
4560752 .. 4564463
3712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07831.t1

Sequence Viewer

Length: 1335 bp
ATGGCTTCATCAACCAAGTTTTCCGGTGTTGTTATCGTTGCGGTTTCTGCCATCATGGCTTCGATTGCCGGCTGTTATGCCCGGGCAACTATTCCAGATTTTAATGGTGGTGTGGCAGGAAAATTGAAATTATACAGTAGTAGTGCATTTCTCGACGAATTGGATGTTTCAAGATCAGACTTCCCAGCTGATTTTACGTTTGGAGTTGCTACCTCTGCCGCACAGACTGAAGGTTCAGCCAGAGAAGGAGGGAGAGGACCAAGTACATGGGATCATCGCGTTGATATACTGCCAGATGCAATAATAAACAGCGACAAATTTTCTACAGCAATTGATTCATATAGACGATACAAGGAAGATATTAAGATTATCAAGGACCTCGGAGTAAATGCTTACCGATTCTCCATCTCCTGGAGTAGAATATTACCAAAGGGAAGCTTAAGTGGGGGAATCAACCAAGAGGGTATTGATCACTATAACAGCTTCATTGACGATTTGATCAGAAATGGAATCGAACCTTTCGTGACGATTTTACACTCCGACCTTCCACAAGCTCTGGAAGATAAGTATGGTGGTTATTTGAACCACTCATTTGTGAATGACTTTAAAGACTATAGTGAAATTTGCTTCAAATCATTTGGAGATAGAGTTAAAAATTGGTTCACGATTAATGAGCCGACAGTGTCTGCAGTTTACGGCTATGAACTTGGAATCGCCCCGCCGGGAAAGTGTTCACTCAAGGAAGGAGTATGTGTGTTTGGGACTCCAGACAACTGTTTAGTTCCGGCAGGACCATGCAATTTTGGTGGTGACTCTAGCACAGAACCTTACATTGTAGCTCACAACCAAATTCTTGGTCATGCAACCGTGGCTAAGCTCTACAAAGAAAAATATAAAGCACAACAAAAGGGTGAGATTGGAATCGTCCTTGCTTCAAAATACTATGTGCCTTTCTCCAATTCACCTGAAGATAAAGTCGCGGCAGAACGGCTTTTCGACTTCAACCTAGGATGGTTTATGGAACCATTTGTATACGGAGATTATCCAAAGAGTATGAGAGAGTTGGTGAAGGAAAGACTGCCTAGTTTTTCTGCACAAGAGCAAAGCTTGATCAAGGGATGTCTAGATTTTGTTGGGATTAATTACTACACATCAAGTTATGCTAGACATAAGACACCACCACCATTAGAACAATTTCGCTATTCTTTTGATATATCTGCCGAAGAAACAGGTATGAAGGATGGAGATTTCCTAGGCATGGTAGGAAAACCTAAATCATTTCTGAAACACTTGTCAAAGATTGATTCTCAGCTAATTGTTAAGACACAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

445

Amino Acids

49.04

Weight (kDa)

5.83

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 59 - 399 2.6e-104 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 411
AccI GTMKAC 1 cut(s) 1032
AccII CGCG 2 cut(s) 279, 980
AciI CCGC 4 cut(s) 41, 219, 719, 980
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 3 cut(s) 317, 621, 849
AcuI CTGAAG 2 cut(s) 249, 987
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 411, 1258
AflII CTTAAG 1 cut(s) 439
AgsI TTSAA 6 cut(s) 127, 171, 583, 631, 936, 1003
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 8 cut(s) 188, 438, 483, 554, 839, 877, 1107, 1312
AluI AGCT 8 cut(s) 188, 438, 483, 554, 839, 877, 1107, 1312
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 81
ApoI RAATTY 3 cut(s) 317, 621, 849
ArsI GACNNNNNNTTYG 2 cut(s) 841, 873
AseI ATTAAT 2 cut(s) 669, 1140
Asp700I GAANNNNTTC 2 cut(s) 730, 1194
AspA2I CCTAGG 2 cut(s) 1006, 1252
AspS9I GGNCC 3 cut(s) 257, 376, 791
AsuC2I CCSGG 3 cut(s) 82, 83, 723
AsuHPI GGTGA 4 cut(s) 821, 923, 954, 1078
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 3 cut(s) 257, 376, 791
AvrII CCTAGG 2 cut(s) 1006, 1252
BccI CCATC 4 cut(s) 59, 413, 1005, 1235
BceAI ACGGC 2 cut(s) 712, 1004
BciT130I CCWGG 1 cut(s) 412
BclI TGATCA 3 cut(s) 469, 498, 1110
BcnI CCSGG 3 cut(s) 82, 83, 723
BfaI CTAG 6 cut(s) 816, 1007, 1083, 1124, 1164, 1253
BfmI CTRYAG 3 cut(s) 324, 613, 687
BfrI CTTAAG 1 cut(s) 439
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 2 cut(s) 219, 981
BlnI CCTAGG 2 cut(s) 1006, 1252
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 2 cut(s) 220, 982
Bme1390I CCNGG 4 cut(s) 82, 83, 412, 723
Bme18I GGWCC 3 cut(s) 257, 376, 791
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 3 cut(s) 257, 376, 791
BmiI GGNNCC 1 cut(s) 1023
BmrFI CCNGG 4 cut(s) 82, 83, 412, 723
BmsI GCATC 1 cut(s) 286
BpmI CTGGAG 2 cut(s) 433, 750
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 3 cut(s) 82, 83, 723
BsaBI GATNNNNATC 1 cut(s) 920
BsaJI CCNNGG 5 cut(s) 81, 379, 867, 1006, 1252
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 6 cut(s) 386, 416, 633, 663, 738, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 1258
Bse118I RCCGGY 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 920
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 5 cut(s) 81, 379, 867, 1006, 1252
BseGI GGATG 4 cut(s) 169, 1016, 1124, 1246
BseJI GATNNNNATC 1 cut(s) 920
BseLI CCNNNNNNNGG 2 cut(s) 411, 1258
BseMII CTCAG 1 cut(s) 1322
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 1077
Bsh1236I CGCG 2 cut(s) 279, 980
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 5 cut(s) 24, 69, 82, 722, 785
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 2 cut(s) 411, 1258
BsmFI GGGAC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 81
Bsp143I GATC 5 cut(s) 173, 271, 469, 498, 1110
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 4 cut(s) 41, 219, 719, 980
BspCNI CTCAG 1 cut(s) 1321
BspFNI CGCG 2 cut(s) 279, 980
BspLI GGNNCC 1 cut(s) 1023
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 5 cut(s) 81, 379, 867, 1006, 1252
BssMI GATC 5 cut(s) 173, 271, 469, 498, 1110
BssNAI GTATAC 1 cut(s) 1033
BssT1I CCWWGG 2 cut(s) 1006, 1252
Bst1107I GTATAC 1 cut(s) 1033
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 4 cut(s) 137, 682, 776, 868
BstAFI CTTAAG 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 873, 1308
BstDSI CCRYGG 1 cut(s) 867
BstF5I GGATG 4 cut(s) 169, 1016, 1124, 1246
BstFNI CGCG 2 cut(s) 279, 980
BstKTI GATC 5 cut(s) 176, 274, 472, 501, 1113
BstMBI GATC 5 cut(s) 173, 271, 469, 498, 1110
BstMWI GCNNNNNNNGC 5 cut(s) 47, 56, 65, 215, 869
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 4 cut(s) 80, 81, 410, 721
BstSFI CTRYAG 3 cut(s) 324, 613, 687
BstUI CGCG 2 cut(s) 279, 980
BstXI CCANNNNNNTGG 2 cut(s) 267, 854
BstZ17I GTATAC 1 cut(s) 1033
BtgI CCRYGG 1 cut(s) 867
BtgZI GCGATG 1 cut(s) 260
BtsCI GGATG 4 cut(s) 169, 1016, 1124, 1246
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 686
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 257, 376, 791
Cfr9I CCCGGG 1 cut(s) 81
Csp6I GTAC 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 5 cut(s) 55, 267, 795, 860, 1258
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 873, 1308
DpnI GATC 5 cut(s) 175, 273, 471, 500, 1112
DpnII GATC 5 cut(s) 173, 271, 469, 498, 1110
DraI TTTAAA 1 cut(s) 607
Eco130I CCWWGG 2 cut(s) 1006, 1252
Eco47I GGWCC 3 cut(s) 257, 376, 791
Eco57I CTGAAG 2 cut(s) 249, 987
Eco88I CYCGRG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 2 cut(s) 1006, 1252
ErhI CCWWGG 2 cut(s) 1006, 1252
FaeI CATG 5 cut(s) 58, 270, 798, 863, 1261
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 775
FatI CATG 5 cut(s) 54, 266, 794, 859, 1257
FauI CCCGC 1 cut(s) 726
FbaI TGATCA 3 cut(s) 469, 498, 1110
FblI GTMKAC 1 cut(s) 1032
Fnu4HI GCNGC 2 cut(s) 219, 981
FokI GGATG 4 cut(s) 176, 1023, 1131, 1253
Fsp4HI GCNGC 2 cut(s) 219, 981
FspBI CTAG 6 cut(s) 816, 1007, 1083, 1124, 1164, 1253
GluI GCNGC 2 cut(s) 219, 981
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 433, 750
HapII CCGG 5 cut(s) 24, 69, 82, 722, 785
Hin1II CATG 5 cut(s) 58, 270, 798, 863, 1261
HindIII AAGCTT 2 cut(s) 436, 1105
HinfI GANTC 9 cut(s) 335, 399, 450, 510, 711, 763, 812, 921, 1304
HpaII CCGG 5 cut(s) 24, 69, 82, 722, 785
HphI GGTGA 4 cut(s) 821, 923, 954, 1078
Hpy166II GTNNAC 4 cut(s) 663, 694, 734, 1033
Hpy188I TCNGA 5 cut(s) 178, 383, 503, 541, 1284
Hpy188III TCNNGA 8 cut(s) 95, 152, 171, 523, 557, 664, 767, 1124
Hpy8I GTNNAC 4 cut(s) 663, 694, 734, 1033
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 6 cut(s) 224, 239, 554, 737, 1063, 1231
HpyCH4III ACNGT 4 cut(s) 137, 682, 776, 868
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 6 cut(s) 146, 299, 689, 798, 863, 1094
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 56, 65, 215, 869
HpyF3I CTNAG 2 cut(s) 873, 1308
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 5 cut(s) 58, 270, 798, 863, 1261
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 3 cut(s) 469, 498, 1110
Kzo9I GATC 5 cut(s) 173, 271, 469, 498, 1110
LweI GCATC 1 cut(s) 286
MaeI CTAG 6 cut(s) 816, 1007, 1083, 1124, 1164, 1253
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 523, 809
MalI GATC 5 cut(s) 175, 273, 471, 500, 1112
MboI GATC 5 cut(s) 173, 271, 469, 498, 1110
MboII GAAGA 4 cut(s) 368, 572, 980, 1235
MfeI CAATTG 1 cut(s) 330
MlyI GAGTC 2 cut(s) 757, 806
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 5 cut(s) 223, 242, 248, 389, 454
MroNI GCCGGC 1 cut(s) 68
MroXI GAANNNNTTC 2 cut(s) 730, 1194
MseI TTAA 8 cut(s) 102, 363, 440, 606, 651, 669, 1140, 1320
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 439
MspI CCGG 5 cut(s) 24, 69, 82, 722, 785
MspR9I CCNGG 4 cut(s) 82, 83, 412, 723
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 2 cut(s) 279, 980
MwoI GCNNNNNNNGC 5 cut(s) 47, 56, 65, 215, 869
NaeI GCCGGC 1 cut(s) 70
NciI CCSGG 3 cut(s) 82, 83, 723
NdeII GATC 5 cut(s) 173, 271, 469, 498, 1110
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 5 cut(s) 58, 270, 798, 863, 1261
NlaIV GGNNCC 1 cut(s) 1023
NmuCI GTSAC 2 cut(s) 523, 809
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 730, 1194
PfeI GAWTC 7 cut(s) 335, 399, 450, 510, 711, 921, 1304
PflFI GACNNNGTC 1 cut(s) 682
PflMI CCANNNNNTGG 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 2 cut(s) 220, 982
PleI GAGTC 2 cut(s) 757, 806
PpsI GAGTC 2 cut(s) 757, 806
PpuMI RGGWCCY 1 cut(s) 376
PshBI ATTAAT 2 cut(s) 669, 1140
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 1023
PspPI GGNCC 3 cut(s) 257, 376, 791
PspPPI RGGWCCY 1 cut(s) 376
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 686
PsyI GACNNNGTC 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 8 cut(s) 102, 363, 440, 606, 651, 669, 1140, 1320
SatI GCNGC 2 cut(s) 219, 981
Sau3AI GATC 5 cut(s) 173, 271, 469, 498, 1110
Sau96I GGNCC 3 cut(s) 257, 376, 791
SchI GAGTC 2 cut(s) 757, 806
ScrFI CCNGG 4 cut(s) 82, 83, 412, 723
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 3 cut(s) 324, 613, 687
SinI GGWCC 3 cut(s) 257, 376, 791
SmaI CCCGGG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 439, 737
SmoI CTYRAG 2 cut(s) 439, 737
SrfI GCCCGGGC 1 cut(s) 83
SsiI CCGC 4 cut(s) 41, 219, 719, 980
SspI AATATT 1 cut(s) 423
SspMI CTAG 6 cut(s) 816, 1007, 1083, 1124, 1164, 1253
StyD4I CCNGG 4 cut(s) 80, 81, 410, 721
StyI CCWWGG 2 cut(s) 1006, 1252
TaaI ACNGT 4 cut(s) 137, 682, 776, 868
TaiI ACGT 1 cut(s) 200
TaqI TCGA 4 cut(s) 62, 153, 513, 996
TatI WGTACW 1 cut(s) 263
TauI GCSGC 2 cut(s) 221, 983
TfiI GAWTC 7 cut(s) 335, 399, 450, 510, 711, 921, 1304
Tru1I TTAA 8 cut(s) 102, 363, 440, 606, 651, 669, 1140, 1320
Tru9I TTAA 8 cut(s) 102, 363, 440, 606, 651, 669, 1140, 1320
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 2 cut(s) 523, 809
Tsp45I GTSAC 2 cut(s) 523, 809
TspDTI ATGAA 4 cut(s) 327, 475, 717, 1250
TspGWI ACGGA 1 cut(s) 1050
TspMI CCCGGG 1 cut(s) 81
TspRI CASTG 1 cut(s) 687
Tth111I GACNNNGTC 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 411
Vha464I CTTAAG 1 cut(s) 439
VpaK11BI GGWCC 3 cut(s) 257, 376, 791
VspI ATTAAT 2 cut(s) 669, 1140
XapI RAATTY 3 cut(s) 317, 621, 849
XbaI TCTAGA 1 cut(s) 1123
XmaI CCCGGG 1 cut(s) 81
XmaJI CCTAGG 2 cut(s) 1006, 1252
XmiI GTMKAC 1 cut(s) 1032
XmnI GAANNNNTTC 2 cut(s) 730, 1194
XspI CTAG 6 cut(s) 816, 1007, 1083, 1124, 1164, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.