Rh7DG116500

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000392
Physical Location & Seq
Reverse (-)
9838150 .. 9839120
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG116500.1

Sequence Viewer

Length: 534 bp
ATGGCTTCATCAACAGAGTTTTCCTATGTTCTCATTGTGGTTTTTGCGATGGCTTCCATAGCCTGCTGGCCTGTCGAGGCTAATTTGGAAGGCGTGGTTCCAACTGCGGAGTATTTGACAGTAGGCGGATTGACTTTCGGATTGAATTTAAGCAGTCCATCATATCTCGAAGAACTGAATGTTACGAAATCAGACTTCCCAACTGATTTCGCTTTTGGAGTTGGTACCTCTGCTGGACAGGTTGAAGGGGCAGCGAGAGAATTTGGGAGAGGACCAAGTACATGGGATCATCGCGTTGATACACTCCCTGGTTATATTCACAATAGCGACAAATTTTCTACAGCAATTGATTCATATAGACAATACAAGGAAGATATTCAGATTATGAAGGACCTCGGAGTAGATTCTTACCGGTTCTCCATCTCTTGGAGTAGGATTTTACCAAATGGAAGCTTAAGTGGCGGAATTAACCAGCAGGGTGTTGATCACTATAACAGTTTGATTGACGAATTGATAAAAAATGGTAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

177

Amino Acids

19.35

Weight (kDa)

4.65

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 63 - 175 3.9e-38 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 426
AccII CGCG 1 cut(s) 294
AciI CCGC 3 cut(s) 107, 126, 462
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 3 cut(s) 145, 260, 332
AfaI GTAC 2 cut(s) 226, 280
AfiI CCNNNNNNNGG 1 cut(s) 426
AflII CTTAAG 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 145, 245
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 453
AluI AGCT 1 cut(s) 453
AlwI GGATC 1 cut(s) 294
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 3 cut(s) 145, 260, 332
AsiGI ACCGGT 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 375
Asp718I GGTACC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 272, 391
AvaII GGWCC 2 cut(s) 272, 391
BanI GGYRCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 263
BccI CCATC 3 cut(s) 43, 166, 428
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 484
BfmI CTRYAG 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 454
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 272, 391
BmgT120I GGNCC 2 cut(s) 272, 391
BmiI GGNNCC 2 cut(s) 99, 226
BmrFI CCNGG 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 307, 394
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse118I RCCGGY 1 cut(s) 411
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 307, 394
BseLI CCNNNNNNNGG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 411
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 426
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 286, 484
BspACI CCGC 3 cut(s) 107, 126, 462
BspANI GGCC 1 cut(s) 70
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 99, 226
BspPI GGATC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 307, 394
BssMI GATC 2 cut(s) 286, 484
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 121, 497
BstAFI CTTAAG 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 64, 68
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 2 cut(s) 289, 487
BstMBI GATC 2 cut(s) 286, 484
BstMWI GCNNNNNNNGC 2 cut(s) 59, 459
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 70
BtgZI GCGATG 2 cut(s) 62, 275
Cac8I GCNNGC 2 cut(s) 64, 68
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 272, 391
Csp6I GTAC 2 cut(s) 225, 279
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 1 cut(s) 282
CviJI RGCY 6 cut(s) 5, 53, 62, 70, 80, 453
CviKI_1 RGCY 6 cut(s) 5, 53, 62, 70, 80, 453
CviQI GTAC 2 cut(s) 225, 279
DpnI GATC 2 cut(s) 288, 486
DpnII GATC 2 cut(s) 286, 484
EciI GGCGGA 2 cut(s) 141, 477
Eco47I GGWCC 2 cut(s) 272, 391
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 285
FaiI YATR 9 cut(s) 27, 59, 163, 283, 315, 355, 357, 386, 492
FatI CATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 412
Hin1II CATG 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 2 cut(s) 350, 404
HpaII CCGG 1 cut(s) 412
Hpy188I TCNGA 4 cut(s) 140, 193, 381, 398
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 83, 239, 382
HpyCH4III ACNGT 2 cut(s) 121, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 459
Hsp92II CATG 1 cut(s) 285
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 286, 484
Lsp1109I GCAGC 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 288, 486
MboI GATC 2 cut(s) 286, 484
MboII GAAGA 2 cut(s) 182, 383
MfeI CAATTG 1 cut(s) 345
MluCI AATT 8 cut(s) 82, 145, 260, 332, 345, 465, 509, 529
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 4 cut(s) 70, 238, 263, 404
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 3 cut(s) 149, 455, 468
MspCI CTTAAG 1 cut(s) 454
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 59, 459
NdeII GATC 2 cut(s) 286, 484
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 2 cut(s) 99, 226
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 350, 404
PflMI CCANNNNNTGG 1 cut(s) 426
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 99, 226
PspPI GGNCC 2 cut(s) 272, 391
PspPPI RGGWCCY 1 cut(s) 391
RsaI GTAC 2 cut(s) 226, 280
RsaNI GTAC 2 cut(s) 225, 279
SaqAI TTAA 3 cut(s) 149, 455, 468
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 286, 484
Sau96I GGNCC 2 cut(s) 272, 391
ScrFI CCNGG 1 cut(s) 309
SetI ASST 4 cut(s) 230, 243, 396, 455
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 272, 391
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 8 cut(s) 82, 145, 260, 332, 345, 465, 509, 529
SsiI CCGC 3 cut(s) 107, 126, 462
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 121, 497
TaqI TCGA 2 cut(s) 75, 168
TasI AATT 8 cut(s) 82, 145, 260, 332, 345, 465, 509, 529
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 2 cut(s) 350, 404
Tru1I TTAA 3 cut(s) 149, 455, 468
Tru9I TTAA 3 cut(s) 149, 455, 468
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 342, 401
Van91I CCANNNNNTGG 1 cut(s) 426
Vha464I CTTAAG 1 cut(s) 454
VpaK11BI GGWCC 2 cut(s) 272, 391
XapI RAATTY 3 cut(s) 145, 260, 332
XmnI GAANNNNTTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.