Rh7AG112400

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000392
Physical Location & Seq
Reverse (-)
8802127 .. 8803566
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG112400.1

Sequence Viewer

Length: 627 bp
ATGTCTTTCAGGAATGATTTTAGAGACTACAGTGAAATTTGCTTCAAATCATTCGGAGATAGAGTTAAAAATTGGTTCACAGTCAATGAGCCAACAGTTTCTGCAGTTTACGGGTATGAACTTGGGATCGCTCCACCTGGGAGGTGTTCACTCAAGGAAGGAGTTTGTGTCTTTGGGTCTCCAGAGAGCTGTTTAGTCCCGGCAGGTCCATGCAATTTTGGTGGTGATTCTAGCACAGAACCTTACATTGTAGCCCACAACCAAATTCTTGCTCATGCCACCGCGGCTAAGCTCTACAAACAAAAATACCAAGCACAACAAAAGGGACTTTTTACAATAAGGAACAATGAACTTGCACTTGCTGATCAATTGAAGGACCCTGAACGAATTTCATTTATTGTTCGTCATTTGTATCGTCTCGACAAAGCAATTAAGAACGGGGTAAACGTAAAAGGATACCTCTACTGGTCTCTCTTCGATGACTTTGAATGGGGAATGGGGTTTTTGCATAGGTATGGGCTATACTATATCGATTTCGATCACAATAACAGGCGCATCCCGAAACAGTCTGCTGAGTGGTTCAAAGCTTTCCTTCAAAGTGATCATGTGACTCGAGCTAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

208

Amino Acids

23.86

Weight (kDa)

8.52

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 5 - 110 8e-18 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 122 - 200 3.8e-23 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
AccII CGCG 1 cut(s) 284
AciI CCGC 2 cut(s) 282, 284
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 3 cut(s) 36, 264, 387
AgsI TTSAA 5 cut(s) 46, 373, 488, 583, 596
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 5 cut(s) 189, 292, 587, 617, 624
AluI AGCT 5 cut(s) 189, 292, 587, 617, 624
Alw26I GTCTC 4 cut(s) 18, 183, 422, 474
AlwI GGATC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 3 cut(s) 36, 264, 387
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 206, 376
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 236
AsuNHI GCTAGC 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 2 cut(s) 206, 376
BciT130I CCWGG 1 cut(s) 138
BciVI GTATCC 1 cut(s) 449
BclI TGATCA 2 cut(s) 364, 601
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 4 cut(s) 18, 183, 422, 474
BfaI CTAG 2 cut(s) 231, 618
BfmI CTRYAG 2 cut(s) 28, 102
BfuAI ACCTGC 1 cut(s) 194
BfuI GTATCC 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 2 cut(s) 285, 622
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 2 cut(s) 286, 623
Bme1390I CCNGG 2 cut(s) 138, 200
Bme18I GGWCC 2 cut(s) 206, 376
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 2 cut(s) 206, 376
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 138, 200
BmsI GCATC 1 cut(s) 564
BmtI GCTAGC 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 537
BsaI GGTCTC 2 cut(s) 183, 474
BsaJI CCNNGG 2 cut(s) 137, 282
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 153, 183
Bse1I ACTGG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 2 cut(s) 137, 282
BseGI GGATG 1 cut(s) 555
BseJI GATNNNNATC 1 cut(s) 537
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 2 cut(s) 182, 339
BsmAI GTCTC 4 cut(s) 18, 183, 422, 474
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 182, 339
Bso31I GGTCTC 2 cut(s) 183, 474
BsoBI CYCGRG 1 cut(s) 612
Bsp143I GATC 4 cut(s) 126, 364, 538, 601
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 2 cut(s) 282, 284
BspCNI CTCAG 1 cut(s) 565
BspDI ATCGAT 1 cut(s) 531
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 194
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 1 cut(s) 134
BspTNI GGTCTC 2 cut(s) 183, 474
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 137, 282
BssMI GATC 4 cut(s) 126, 364, 538, 601
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 32, 82, 97, 567
Bst6I CTCTTC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 288, 573
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 555
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 4 cut(s) 129, 367, 541, 604
BstMAI GTCTC 4 cut(s) 18, 183, 422, 474
BstMBI GATC 4 cut(s) 126, 364, 538, 601
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 136, 198
BstSFI CTRYAG 2 cut(s) 28, 102
BstUI CGCG 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 531
BsuI GTATCC 1 cut(s) 449
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 619
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 206, 376
Cfr42I CCGCGG 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 531
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 3 cut(s) 210, 275, 605
CviJI RGCY 9 cut(s) 91, 189, 254, 287, 292, 520, 587, 617, 624
CviKI_1 RGCY 9 cut(s) 91, 189, 254, 287, 292, 520, 587, 617, 624
DdeI CTNAG 2 cut(s) 288, 573
DpnI GATC 4 cut(s) 128, 366, 540, 603
DpnII GATC 4 cut(s) 126, 364, 538, 601
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Eco31I GGTCTC 2 cut(s) 183, 474
Eco47I GGWCC 2 cut(s) 206, 376
Eco88I CYCGRG 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 3 cut(s) 213, 278, 608
FaiI YATR 8 cut(s) 117, 211, 276, 510, 516, 523, 528, 606
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 2 cut(s) 182, 339
FatI CATG 3 cut(s) 209, 274, 604
FbaI TGATCA 2 cut(s) 364, 601
Fnu4HI GCNGC 2 cut(s) 285, 622
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 285, 622
FspBI CTAG 2 cut(s) 231, 618
GlaI GCGC 1 cut(s) 554
GluI GCNGC 2 cut(s) 285, 622
GsuI CTGGAG 1 cut(s) 165
HapII CCGG 1 cut(s) 200
HhaI GCGC 1 cut(s) 555
Hin1II CATG 3 cut(s) 213, 278, 608
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 2 cut(s) 227, 610
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 4 cut(s) 78, 109, 149, 445
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 4 cut(s) 10, 182, 419, 559
Hpy8I GTNNAC 4 cut(s) 78, 109, 149, 445
HpyAV CCTTC 3 cut(s) 152, 367, 602
HpyCH4III ACNGT 4 cut(s) 32, 82, 97, 567
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 4 cut(s) 104, 213, 356, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 288, 573
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 3 cut(s) 213, 278, 608
HspAI GCGC 1 cut(s) 553
Ksp22I TGATCA 2 cut(s) 364, 601
KspI CCGCGG 1 cut(s) 285
Kzo9I GATC 4 cut(s) 126, 364, 538, 601
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 8 cut(s) 123, 150, 189, 195, 213, 393, 451, 535
LweI GCATC 1 cut(s) 564
MaeI CTAG 2 cut(s) 231, 618
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 607
MalI GATC 4 cut(s) 128, 366, 540, 603
MboI GATC 4 cut(s) 126, 364, 538, 601
MboII GAAGA 1 cut(s) 466
MfeI CAATTG 1 cut(s) 368
MluCI AATT 7 cut(s) 36, 70, 214, 264, 368, 387, 429
MlyI GAGTC 1 cut(s) 604
MnlI CCTC 2 cut(s) 135, 470
MseI TTAA 2 cut(s) 66, 432
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 138, 200
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 200
NdeII GATC 4 cut(s) 126, 364, 538, 601
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 3 cut(s) 213, 278, 608
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 286, 623
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 206, 376
PspPPI RGGWCCY 1 cut(s) 376
PspXI VCTCGAGB 1 cut(s) 612
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 513
SacII CCGCGG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 66, 432
SatI GCNGC 2 cut(s) 285, 622
Sau3AI GATC 4 cut(s) 126, 364, 538, 601
Sau96I GGNCC 2 cut(s) 206, 376
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 2 cut(s) 138, 200
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 2 cut(s) 28, 102
Sfr274I CTCGAG 1 cut(s) 612
Sfr303I CCGCGG 1 cut(s) 285
SgrBI CCGCGG 1 cut(s) 285
SinI GGWCC 2 cut(s) 206, 376
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 152, 612
SmoI CTYRAG 2 cut(s) 152, 612
Sse9I AATT 7 cut(s) 36, 70, 214, 264, 368, 387, 429
SsiI CCGC 2 cut(s) 282, 284
SspMI CTAG 2 cut(s) 231, 618
StyD4I CCNGG 2 cut(s) 136, 198
TaaI ACNGT 4 cut(s) 32, 82, 97, 567
TaiI ACGT 1 cut(s) 450
TaqI TCGA 5 cut(s) 420, 477, 531, 537, 613
TasI AATT 7 cut(s) 36, 70, 214, 264, 368, 387, 429
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 66, 432
Tru9I TTAA 2 cut(s) 66, 432
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 132, 363, 381
TspRI CASTG 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 206, 376
XapI RAATTY 3 cut(s) 36, 264, 387
XhoI CTCGAG 1 cut(s) 612
XspI CTAG 2 cut(s) 231, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.