Rh7DG115600

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000392
Physical Location & Seq
Forward (+)
9789624 .. 9790558
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG115600.1

Sequence Viewer

Length: 552 bp
ATGAATGCATCAAACCCTGAAGAATTGAACGTGAAGTGGACTGATTTCCCTAATGATTTTGTTTTTGGAGTCAGCACTGCTGCTACACAGATTGAAGGATCGGCAAAAGAAGCAGGAAAAGGACCAAGTGTTTGGGACAAGTTTGTTGAGATCCCTGAGAGAATTATGGACAAATCTAACATGTTTACGAGCATTGATTCATACAAGCGATACAAGGAAGATGTGAAGTTAGTGAAAGACCTTGGAGTTGATTCTTATAGATTTTCCATCCCCTGGACTAGGATTCTTCCGAATGGAACATTGAGTGGAGGAGTAAACCAAGAGGGTGTTGATCACTACAACTGTTTAATTGATGAACTAATCAAGAATGGTAAGAACCTAACATTGCTTGGTATACGATCTTTTACAAACCTCCAATCTTTTCATATCGAAATATATATTGGTAATGTCTCAAATGCAGGCATCACACCCTATGTAACCCTATTACATTTTGATCCACCACAAGCCTTGACAGACAAGTATGATGGCGTTTTAAATCGCTCCTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

183

Amino Acids

20.53

Weight (kDa)

5.19

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 15 - 124 7.5e-42 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 273
AccI GTMKAC 1 cut(s) 394
AclWI GGATC 3 cut(s) 106, 145, 488
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 273, 279
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 2 cut(s) 28, 95
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 3 cut(s) 106, 145, 488
ApeKI GCWGC 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 275, 518
BciT130I CCWGG 1 cut(s) 274
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 17, 471
BsaJI CCNNGG 2 cut(s) 241, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 279
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 241, 272
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 273, 279
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 273, 279
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 5 cut(s) 98, 150, 331, 398, 493
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 3 cut(s) 106, 145, 488
BsrDI GCAATG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 241, 272
BssMI GATC 5 cut(s) 98, 150, 331, 398, 493
BssNAI GTATAC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 5 cut(s) 101, 153, 334, 401, 496
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 5 cut(s) 98, 150, 331, 398, 493
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 132
BstYI RGATCY 1 cut(s) 150
BstZ17I GTATAC 1 cut(s) 395
BtsCI GGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 1 cut(s) 181
CviJI RGCY 1 cut(s) 506
CviKI_1 RGCY 1 cut(s) 506
DdeI CTNAG 1 cut(s) 156
DpnI GATC 5 cut(s) 100, 152, 333, 400, 495
DpnII GATC 5 cut(s) 98, 150, 331, 398, 493
DraI TTTAAA 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 184
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 184
HinfI GANTC 4 cut(s) 69, 197, 251, 283
Hpy166II GTNNAC 4 cut(s) 39, 186, 316, 395
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 4 cut(s) 39, 186, 316, 395
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 8, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 5 cut(s) 98, 150, 331, 398, 493
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 6 cut(s) 30, 99, 168, 259, 286, 444
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 17, 471
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 475
MalI GATC 5 cut(s) 100, 152, 333, 400, 495
MboI GATC 5 cut(s) 98, 150, 331, 398, 493
MboII GAAGA 3 cut(s) 32, 230, 278
MflI RGATCY 1 cut(s) 150
MluCI AATT 3 cut(s) 23, 162, 348
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 3 cut(s) 302, 316, 422
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 2 cut(s) 347, 533
MspR9I CCNGG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 5 cut(s) 98, 150, 331, 398, 493
NlaIII CATG 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 184
PciI ACATGT 1 cut(s) 180
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 197, 251, 283
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PscI ACATGT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 150
SaqAI TTAA 2 cut(s) 347, 533
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 5 cut(s) 98, 150, 331, 398, 493
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 274
SetI ASST 4 cut(s) 33, 243, 381, 414
SfaNI GCATC 2 cut(s) 17, 471
SinI GGWCC 1 cut(s) 122
Sse9I AATT 3 cut(s) 23, 162, 348
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 429
TasI AATT 3 cut(s) 23, 162, 348
TfiI GAWTC 3 cut(s) 197, 251, 283
Tru1I TTAA 2 cut(s) 347, 533
Tru9I TTAA 2 cut(s) 347, 533
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 17, 189, 369, 413
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 277
XceI RCATGY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.