RLG00000035079

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
60465226 .. 60468331
3106 bp
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UTR
Exon/CDS
Intron
RLM00000035079

Sequence Viewer

Length: 381 bp
ATGTTTTTCTATGCTCGTATCTCAGTTTTTGCCATGGCTTCAATACCCTACATGCCTGTCGAGGCTACTACAAGTTTGAATGGTATGGTTGCAATTGTGGCGAATATGACAGTAGGAAGAATGACTTTCGGATTGAATTTATTTAGTACTTCATTTCTCAAAGAAATGAATGTTATGAAATCAGACTTTCCAACTGATTTTTCTTTTGGAGTGGCTACCTCTATTGCACCAGCCCACAACCAAATTCTTGCTCATGCCATCGCGGCTAAGCTTTACAAAGAAAAATACCAAGAAAAACAAAAGGGAGAAATCGGAATCGTCCTTGTTTCGAGAAACTTTGTGCCTTCTTCAGAATCGCAGGAAGATAAAGCGGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

13.81

Weight (kDa)

7.99

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 59 - 124 3.4e-07 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 263
AciI CCGC 2 cut(s) 263, 371
AcsI RAATTY 2 cut(s) 136, 243
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 3 cut(s) 42, 79, 136
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 136, 243
BccI CCATC 1 cut(s) 266
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 3 cut(s) 264, 372, 375
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 3 cut(s) 265, 373, 376
BmcAI AGTACT 1 cut(s) 148
Bpu1102I GCTNAGC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 2 cut(s) 263, 371
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 22, 267
BstDSI CCRYGG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 98, 263
BstNSI RCATGY 1 cut(s) 55
BstUI CGCG 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 244
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 34, 52, 254
CviJI RGCY 6 cut(s) 38, 65, 215, 233, 266, 271
CviKI_1 RGCY 6 cut(s) 38, 65, 215, 233, 266, 271
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 2 cut(s) 22, 267
Eco130I CCWWGG 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 3 cut(s) 37, 55, 257
FaiI YATR 8 cut(s) 12, 35, 53, 86, 107, 176, 255, 379
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 3 cut(s) 33, 51, 253
Fnu4HI GCNGC 3 cut(s) 264, 372, 375
Fsp4HI GCNGC 3 cut(s) 264, 372, 375
GluI GCNGC 3 cut(s) 264, 372, 375
Hin1II CATG 3 cut(s) 37, 55, 257
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 315, 353
Hpy188I TCNGA 4 cut(s) 131, 184, 314, 352
Hpy188III TCNNGA 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 92, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 263
HpyF3I CTNAG 2 cut(s) 22, 267
Hsp92II CATG 3 cut(s) 37, 55, 257
LpnPI CCDG 3 cut(s) 69, 243, 344
MboII GAAGA 3 cut(s) 129, 339, 374
MfeI CAATTG 1 cut(s) 93
MluCI AATT 3 cut(s) 93, 136, 243
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 2 cut(s) 55, 229
MunI CAATTG 1 cut(s) 93
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 98, 263
NcoI CCATGG 1 cut(s) 33
NlaIII CATG 3 cut(s) 37, 55, 257
NspI RCATGY 1 cut(s) 55
PfeI GAWTC 2 cut(s) 315, 353
PkrI GCNGC 3 cut(s) 265, 373, 376
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SatI GCNGC 3 cut(s) 264, 372, 375
ScaI AGTACT 1 cut(s) 148
SetI ASST 2 cut(s) 221, 273
Sse9I AATT 3 cut(s) 93, 136, 243
SsiI CCGC 2 cut(s) 263, 371
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 60, 329
TasI AATT 3 cut(s) 93, 136, 243
TatI WGTACW 1 cut(s) 146
TauI GCSGC 2 cut(s) 266, 374
TfiI GAWTC 2 cut(s) 315, 353
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 141, 182, 191
XapI RAATTY 2 cut(s) 136, 243
XceI RCATGY 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.