Rorug06G0505800

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000392
Physical Location & Seq
Reverse (-)
62125811 .. 62126634
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0505800.1

Sequence Viewer

Length: 726 bp
ATGTTGTCCATAAGCTCTTGTTTGGCTTTCAACATCACGAAGCTACTTAACAAAGAATCCGATTTCAGCACCCTTAACAAATACCTCTCCGAGACCAAACTCGCCGACCAGATCAACAAGCGAAGCACCATCACCGTCCTCGCTGTGGCCAACGACGCAATGGGTGGCCTCTCTAGCGACGACAGCTTCACCCTCAAGTCGGTCATGAGCGGCCACGTCATCCTCGACTACTACGACAAGGAGAAGTTGGCTAAGCTTGCCAAGAACAATAGAAGCGCCACGCTGACGTCTCTATTCCAGAGTTCGGGCGTGGCTCAAAACCAACAGGGCTTCGTTCGGGTCGAAGTCGTTGACGGTCAGCTCCATCATTGGGGATTTGGGGTTCCCAACATCAATGCATCTCCGGCGCCCGAGAAGGCTCCGGCACCGAAGAAAGGCAAGTCTACCAGTCCGGAAGACGAGGCAGAGAGTCCTTCCGAAGACACCGCTGAAAGTCCCGCCGATGACACGTCGGACTCGGACTCGGAGGCTCCGAGTCCGTCCAAAGCCAGAGATTCGACTCCGCCCAAGCCAGGTTATGAGGATGATCTGGTGACGGCAGATTCGCCATCTTCGACTCCGGCACCTGCGCCCTCCAAGAATGATGCACGCGCCACGGCTGCTGAGATGGGAGTTGGGGTTGTTGCGATGGGGTTGGTTATTTCAGTATTGGTTGCTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

241

Amino Acids

25.35

Weight (kDa)

4.78

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 21 - 96 9.4e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
AatII GACGTC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 3 cut(s) 406, 424, 622
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 651
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 4 cut(s) 210, 486, 498, 563
AcoI YGGCCR 2 cut(s) 147, 211
AcyI GRCGYC 2 cut(s) 287, 407
AfiI CCNNNNNNNGG 6 cut(s) 145, 199, 304, 370, 434, 572
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 1 cut(s) 31
AjiI CACGTC 2 cut(s) 217, 510
AjnI CCWGG 1 cut(s) 571
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 5 cut(s) 15, 43, 186, 256, 361
AluI AGCT 5 cut(s) 15, 43, 186, 256, 361
Alw26I GTCTC 2 cut(s) 86, 294
Ama87I CYCGRG 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 3 cut(s) 147, 166, 211
ApeKI GCWGC 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 586, 618
AspLEI GCGC 4 cut(s) 278, 409, 631, 653
AsuHPI GGTGA 3 cut(s) 124, 181, 604
AvaI CYCGRG 1 cut(s) 410
BalI TGGCCA 1 cut(s) 149
BanI GGYRCC 3 cut(s) 406, 424, 622
BbsI GAAGAC 2 cut(s) 462, 486
BbvI GCAGC 1 cut(s) 646
BccI CCATC 5 cut(s) 137, 372, 616, 661, 682
BceAI ACGGC 2 cut(s) 612, 672
BciT130I CCWGG 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 86, 294
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 2 cut(s) 279, 410
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 2 cut(s) 211, 660
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 2 cut(s) 212, 661
Bme1390I CCNGG 1 cut(s) 573
BmeT110I CYCGRG 1 cut(s) 410
BmgBI CACGTC 2 cut(s) 217, 510
BmiI GGNNCC 6 cut(s) 384, 408, 420, 426, 531, 624
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 407, 634
BpiI GAAGAC 2 cut(s) 462, 486
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 2 cut(s) 287, 407
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 654
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 199, 304, 370, 434, 572
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 2 cut(s) 219, 589
BseLI CCNNNNNNNGG 6 cut(s) 145, 199, 304, 370, 434, 572
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 646
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 3 cut(s) 149, 168, 213
BshNI GGYRCC 3 cut(s) 406, 424, 622
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 4 cut(s) 404, 422, 452, 620
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 6 cut(s) 145, 199, 304, 370, 434, 572
BsmAI GTCTC 2 cut(s) 86, 294
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 3 cut(s) 149, 168, 213
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 410
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 2 cut(s) 111, 586
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 4 cut(s) 210, 486, 498, 563
BspANI GGCC 3 cut(s) 149, 168, 213
BspCNI CTCAG 1 cut(s) 655
BspEI TCCGGA 1 cut(s) 451
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 6 cut(s) 384, 408, 420, 426, 531, 624
BspMI ACCTGC 1 cut(s) 634
BspT107I GGYRCC 3 cut(s) 406, 424, 622
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 2 cut(s) 111, 586
BssNI GRCGYC 2 cut(s) 287, 407
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 136, 356
BstACI GRCGYC 2 cut(s) 287, 407
BstC8I GCNNGC 2 cut(s) 258, 649
BstDEI CTNAG 2 cut(s) 252, 663
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 219, 589
BstFNI CGCG 1 cut(s) 651
BstH2I RGCGCY 2 cut(s) 279, 410
BstHHI GCGC 4 cut(s) 278, 409, 631, 653
BstKTI GATC 2 cut(s) 114, 589
BstMAI GTCTC 2 cut(s) 86, 294
BstMBI GATC 2 cut(s) 111, 586
BstMWI GCNNNNNNNGC 6 cut(s) 155, 174, 183, 257, 404, 659
BstNI CCWGG 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 571
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 2 cut(s) 462, 486
BsuRI GGCC 3 cut(s) 149, 168, 213
BtgI CCRYGG 1 cut(s) 654
BtgZI GCGATG 1 cut(s) 701
BtrI CACGTC 2 cut(s) 217, 510
BtsCI GGATG 2 cut(s) 219, 589
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 2 cut(s) 258, 649
CciI TCATGA 1 cut(s) 204
CfoI GCGC 4 cut(s) 278, 409, 631, 653
CseI GACGC 1 cut(s) 164
CviAII CATG 1 cut(s) 205
DdeI CTNAG 2 cut(s) 252, 663
DinI GGCGCC 1 cut(s) 408
DpnI GATC 2 cut(s) 113, 588
DpnII GATC 2 cut(s) 111, 586
EaeI YGGCCR 2 cut(s) 147, 211
EciI GGCGGA 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 571
EcoT22I ATGCAT 1 cut(s) 400
EgeI GGCGCC 1 cut(s) 408
EheI GGCGCC 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 11, 206, 579
FaqI GGGAC 1 cut(s) 480
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 505
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 2 cut(s) 211, 660
FokI GGATG 2 cut(s) 206, 596
Fsp4HI GCNGC 2 cut(s) 211, 660
FspBI CTAG 1 cut(s) 174
GlaI GCGC 4 cut(s) 277, 408, 630, 652
GluI GCNGC 2 cut(s) 211, 660
HaeII RGCGCY 2 cut(s) 279, 410
HaeIII GGCC 3 cut(s) 149, 168, 213
HapII CCGG 4 cut(s) 404, 422, 452, 620
HgaI GACGC 1 cut(s) 164
HhaI GCGC 4 cut(s) 278, 409, 631, 653
Hin1I GRCGYC 2 cut(s) 287, 407
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 4 cut(s) 276, 407, 629, 651
HinP1I GCGC 4 cut(s) 276, 407, 629, 651
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 9 cut(s) 56, 469, 515, 521, 535, 554, 559, 602, 616
HpaII CCGG 4 cut(s) 404, 422, 452, 620
HphI GGTGA 3 cut(s) 124, 181, 604
Hpy166II GTNNAC 2 cut(s) 352, 444
Hpy188I TCNGA 8 cut(s) 61, 91, 478, 514, 520, 526, 534, 725
Hpy188III TCNNGA 4 cut(s) 37, 205, 298, 452
Hpy8I GTNNAC 2 cut(s) 352, 444
Hpy99I CGWCG 3 cut(s) 158, 182, 514
HpyAV CCTTC 2 cut(s) 409, 483
HpyCH4III ACNGT 2 cut(s) 136, 356
HpyCH4IV ACGT 3 cut(s) 216, 287, 509
HpyCH4V TGCA 2 cut(s) 398, 647
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 174, 183, 257, 404, 659
HpyF3I CTNAG 2 cut(s) 252, 663
HpySE526I ACGT 3 cut(s) 216, 287, 509
Hsp92I GRCGYC 2 cut(s) 287, 407
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 4 cut(s) 276, 407, 629, 651
KasI GGCGCC 1 cut(s) 406
Kpn2I TCCGGA 1 cut(s) 451
Kzo9I GATC 2 cut(s) 111, 586
LmnI GCTCC 3 cut(s) 366, 424, 535
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 2 cut(s) 407, 634
MaeI CTAG 1 cut(s) 174
MaeII ACGT 3 cut(s) 216, 287, 509
MaeIII GTNAC 1 cut(s) 592
MalI GATC 2 cut(s) 113, 588
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 111, 586
MboII GAAGA 4 cut(s) 442, 467, 491, 603
MlsI TGGCCA 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 149
Mly113I GGCGCC 1 cut(s) 407
MlyI GAGTC 6 cut(s) 478, 509, 515, 544, 553, 610
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 95, 149, 179, 203, 233, 454, 520, 574, 643
Mox20I TGGCCA 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 400
MroI TCCGGA 1 cut(s) 451
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 48, 75
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 4 cut(s) 404, 422, 452, 620
MspR9I CCNGG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 6 cut(s) 155, 174, 183, 257, 404, 659
NarI GGCGCC 1 cut(s) 407
NdeII GATC 2 cut(s) 111, 586
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 6 cut(s) 384, 408, 420, 426, 531, 624
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 400
PagI TCATGA 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 5 cut(s) 222, 231, 339, 530, 611
PfeI GAWTC 3 cut(s) 56, 554, 602
PkrI GCNGC 2 cut(s) 212, 661
PleI GAGTC 6 cut(s) 477, 509, 515, 543, 553, 610
PluTI GGCGCC 1 cut(s) 410
PpsI GAGTC 6 cut(s) 477, 509, 515, 543, 553, 610
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 6 cut(s) 384, 408, 420, 426, 531, 624
SaqAI TTAA 2 cut(s) 48, 75
SatI GCNGC 2 cut(s) 211, 660
Sau3AI GATC 2 cut(s) 111, 586
SchI GAGTC 6 cut(s) 478, 509, 515, 544, 553, 610
ScrFI CCNGG 1 cut(s) 573
SfaNI GCATC 2 cut(s) 407, 634
SfoI GGCGCC 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 4 cut(s) 210, 486, 498, 563
SspDI GGCGCC 1 cut(s) 406
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 2 cut(s) 136, 356
TaiI ACGT 3 cut(s) 219, 290, 512
TaqI TCGA 4 cut(s) 225, 342, 557, 614
TaqII GACCGA 1 cut(s) 190
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 3 cut(s) 56, 554, 602
Tru1I TTAA 2 cut(s) 48, 75
Tru9I TTAA 2 cut(s) 48, 75
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 592
TspGWI ACGGA 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 1 cut(s) 174
ZraI GACGTC 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.