pycom06g13640

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000392
Physical Location & Seq
Forward (+)
18548130 .. 18549576
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13640.5

Sequence Viewer

Length: 792 bp
ATGGCAGTCGATGGATATAAACGATACAAGGAGGATATTAAGCTTATCAAGGACGCTGGACTAAATTCTTACAGATTCTCCATCTCCTGGAGTAGGATTTTACCAAAGGGAAGCTTAAGTGGCGGAATTAACCAAGAGGGTATTGATTACTACAATAGCTTGATCGATGAGCTAATAAAAAATGGCATCACACCTTTCGTATTCGGAGATTATCCTCAAAGTATGAAGGAGAGGGTGAAGGATAGGCTTCCCACTTTTTCCGCAGAAGACAAAGTTCTGCTCAATGGGAGTTTAGGGTTGGTTGGTATCAATTATTATACATCAACATATGCCAAACATAAGGCTCCTCCTCGAGGTGAGGCGTTGCGTTATTCCTTCGATCAATGGGCCGAAACAATAGCTATCAAAGATGAAGAAATTCTTGGTGTGACCGATAGTCATTGGCCGGAAGGGCTGCAGAAGCTGTTGGAGTACGTAAAGGATAATTATCAAAATCCAAAACTCTACATTTCTGAAAATGGACTTTCTGATCACAAGGACAATGGCTCTCCACTTGAAGTACTTCTAGAGGATCCATATCGAATTTCCTTTGTTACTCGTCACTTGTATCGAATCAATAAGGCAATTAAGAATGGAGTGAATGTCAAAGGGTACTTCTATTGGGCTCTATTCGACGACATTGAATGGGGCATGGGGTTCAATCGAGTTGGTATTTACTTTGTTGATTTCAGTAACTACACGCGCTACCCCAAGCTCTCCGTTAAGTGGTTCCGAGCTTTCCTTCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

264

Amino Acids

30.4

Weight (kDa)

7.75

Isoelectric Point (pI)

22.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 87
AccII CGCG 1 cut(s) 742
AciI CCGC 2 cut(s) 123, 261
AclWI GGATC 2 cut(s) 566, 579
AcoI YGGCCR 1 cut(s) 443
AcsI RAATTY 3 cut(s) 64, 417, 582
AfaI GTAC 3 cut(s) 473, 561, 653
AfiI CCNNNNNNNGG 4 cut(s) 87, 93, 353, 765
AflII CTTAAG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 557, 683, 700, 785
AhdI GACNNNNNGTC 1 cut(s) 435
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 8 cut(s) 43, 114, 159, 172, 401, 463, 754, 776
AluI AGCT 8 cut(s) 43, 114, 159, 172, 401, 463, 754, 776
AlwI GGATC 2 cut(s) 566, 579
AlwNI CAGNNNCTG 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 2 cut(s) 387, 443
ApeKI GCWGC 1 cut(s) 454
ApoI RAATTY 3 cut(s) 64, 417, 582
Asp700I GAANNNNTTC 2 cut(s) 417, 561
AspLEI GCGC 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 247, 368
AvaI CYCGRG 1 cut(s) 351
BamHI GGATCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 441
BccI CCATC 2 cut(s) 5, 89
BciT130I CCWGG 1 cut(s) 88
BclI TGATCA 1 cut(s) 529
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 455
BfrI CTTAAG 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 451
BisI GCNGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 456
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 3 cut(s) 345, 573, 770
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 475
BsaBI GATNNNNATC 2 cut(s) 486, 576
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 627, 657
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 93, 353, 765
Bse8I GATNNNNATC 2 cut(s) 486, 576
BseBI CCWGG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 165
BseJI GATNNNNATC 2 cut(s) 486, 576
BseLI CCNNNNNNNGG 4 cut(s) 87, 93, 353, 765
BseRI GAGGAG 2 cut(s) 336, 339
BseXI GCAGC 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 742
BshFI GGCC 2 cut(s) 389, 445
BshVI ATCGAT 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 4 cut(s) 87, 93, 353, 765
BsnI GGCC 2 cut(s) 389, 445
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 4 cut(s) 162, 379, 529, 571
BspACI CCGC 2 cut(s) 123, 261
BspANI GGCC 2 cut(s) 389, 445
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 1 cut(s) 742
BspLI GGNNCC 3 cut(s) 345, 573, 770
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 2 cut(s) 566, 579
BspTI CTTAAG 1 cut(s) 115
BssMI GATC 4 cut(s) 162, 379, 529, 571
Bst2UI CCWGG 1 cut(s) 88
BstAFI CTTAAG 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 475
BstENI CCTNNNNNAGG 2 cut(s) 91, 351
BstFNI CGCG 1 cut(s) 742
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 4 cut(s) 165, 382, 532, 574
BstMBI GATC 4 cut(s) 162, 379, 529, 571
BstMWI GCNNNNNNNGC 3 cut(s) 120, 451, 460
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 455
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 1 cut(s) 742
BstV1I GCAGC 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 2 cut(s) 389, 445
BsuTUI ATCGAT 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 1 cut(s) 744
Cfr13I GGNCC 1 cut(s) 387
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 62
Csp6I GTAC 3 cut(s) 472, 560, 652
CviAII CATG 1 cut(s) 691
CviQI GTAC 3 cut(s) 472, 560, 652
DpnI GATC 4 cut(s) 164, 381, 531, 573
DpnII GATC 4 cut(s) 162, 379, 529, 571
DriI GACNNNNNGTC 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 443
Eam1105I GACNNNNNGTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 667
Eco88I CYCGRG 1 cut(s) 351
EcoNI CCTNNNNNAGG 2 cut(s) 91, 351
EcoRII CCWGG 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 667
FaeI CATG 1 cut(s) 694
FaiI YATR 8 cut(s) 18, 224, 318, 328, 330, 339, 577, 692
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 405, 437
FatI CATG 1 cut(s) 690
FauNDI CATATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 1 cut(s) 455
FspBI CTAG 1 cut(s) 566
GlaI GCGC 1 cut(s) 743
GluI GCNGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 2 cut(s) 389, 445
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 744
Hin1II CATG 1 cut(s) 694
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HindIII AAGCTT 2 cut(s) 41, 112
HinfI GANTC 2 cut(s) 75, 612
HpaII CCGG 1 cut(s) 446
HphI GGTGA 2 cut(s) 247, 368
Hpy188I TCNGA 4 cut(s) 206, 514, 529, 773
Hpy188III TCNNGA 1 cut(s) 566
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 5 cut(s) 220, 232, 385, 443, 791
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 451, 460
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 1 cut(s) 694
HspAI GCGC 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 162, 379, 529, 571
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 4 cut(s) 42, 73, 100, 459
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 566
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 4 cut(s) 427, 592, 599, 731
MalI GATC 4 cut(s) 164, 381, 531, 573
MboI GATC 4 cut(s) 162, 379, 529, 571
MboII GAAGA 2 cut(s) 278, 425
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 7 cut(s) 64, 126, 310, 417, 484, 582, 624
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 9 cut(s) 25, 130, 225, 225, 347, 352, 357, 360, 562
MroXI GAANNNNTTC 2 cut(s) 417, 561
MseI TTAA 5 cut(s) 39, 116, 129, 627, 762
MspCI CTTAAG 1 cut(s) 115
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 742
MwoI GCNNNNNNNGC 3 cut(s) 120, 451, 460
NdeI CATATG 1 cut(s) 328
NdeII GATC 4 cut(s) 162, 379, 529, 571
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 3 cut(s) 345, 573, 770
NmuCI GTSAC 2 cut(s) 427, 599
PaeR7I CTCGAG 1 cut(s) 351
PdmI GAANNNNTTC 2 cut(s) 417, 561
PfeI GAWTC 2 cut(s) 75, 612
PflMI CCANNNNNTGG 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 86
PkrI GCNGC 1 cut(s) 456
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 3 cut(s) 345, 573, 770
PspPI GGNCC 1 cut(s) 387
PspXI VCTCGAGB 1 cut(s) 351
PstI CTGCAG 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 3 cut(s) 473, 561, 653
RsaNI GTAC 3 cut(s) 472, 560, 652
SaqAI TTAA 5 cut(s) 39, 116, 129, 627, 762
SatI GCNGC 1 cut(s) 455
Sau3AI GATC 4 cut(s) 162, 379, 529, 571
Sau96I GGNCC 1 cut(s) 387
ScaI AGTACT 1 cut(s) 561
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 455
Sfr274I CTCGAG 1 cut(s) 351
SlaI CTCGAG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 115, 351
SmoI CTYRAG 2 cut(s) 115, 351
SnaBI TACGTA 1 cut(s) 475
Sse9I AATT 7 cut(s) 64, 126, 310, 417, 484, 582, 624
SsiI CCGC 2 cut(s) 123, 261
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 477
TaqI TCGA 8 cut(s) 9, 165, 352, 378, 580, 610, 672, 703
TaqII GACCGA 1 cut(s) 446
TasI AATT 7 cut(s) 64, 126, 310, 417, 484, 582, 624
TatI WGTACW 1 cut(s) 559
TfiI GAWTC 2 cut(s) 75, 612
Tru1I TTAA 5 cut(s) 39, 116, 129, 627, 762
Tru9I TTAA 5 cut(s) 39, 116, 129, 627, 762
TseFI GTSAC 2 cut(s) 427, 599
TseI GCWGC 1 cut(s) 454
Tsp45I GTSAC 2 cut(s) 427, 599
TspDTI ATGAA 2 cut(s) 239, 426
TspGWI ACGGA 1 cut(s) 748
Van91I CCANNNNNTGG 1 cut(s) 87
Vha464I CTTAAG 1 cut(s) 115
XagI CCTNNNNNAGG 2 cut(s) 91, 351
XapI RAATTY 3 cut(s) 64, 417, 582
XbaI TCTAGA 1 cut(s) 565
XhoI CTCGAG 1 cut(s) 351
XmnI GAANNNNTTC 2 cut(s) 417, 561
XspI CTAG 1 cut(s) 566
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.