MD14G1160600.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
25420192 .. 25422625
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1160600.v1.1.491

Sequence Viewer

Length: 954 bp
ATGTTCCTGTGTCCTAATGCAGGCATTGAGCCTTTTGTCACGATGTATCACTTTGATTTACCCCAAGTTCTGCAAGAGAAGTATGGAGGCTTGATGCATCAAATGTTTGTGAAAGACTTCAGCGATTATGCTGAGCTCTGTTTCAAATTGTTTGGAGATAGAGTTAGGCATTGGTTCACCATCAATGAGCCAAATGTTATTGCACAATATGGCTACGAGCTTGGGATTGCCCCACCAGGAAGGTGCTCGCTTCCACAAGGACATTGTGCATTGGGATCTCCACCTCGATGTATGGTGCCACGGGCCCCTGTAACTTTGGTGGTAGAGCAAAATGGAGAAATTGGAATCGTCCTTGCTACTAAGTATTTTAAGCCATATTCTAAGTCACAGGAAGATCGAGCTGCAGCAAAGAGACTGTTTGATTTCTACCTAGGATGGTTGATGGGACCGTTGGTATTTGGAAAATACCCACAAAGCATGAGAGAGCTGGTGAAGGAAAGGCTGCCCACATTTTCAGCAGAAGAGAAATCTCTTGTCAAGGGGAATTTAGGCTTTGCTGGGATAAAGTATTATGTATCAGTTCATGCAAAATATAGACCTCCTCCTCCTACAGAGAATCTGAGATATTCCTACGATCCATGGGCCGAAGAAAAAGATATCAAAGTTGTTCCTGGTGTGTCCGGGAACCATTGGCCAGAAGGGCTGCAGAAGCTCATGAAGTATGTGAAGAATAAATATCGTAGCCCACAAATCTACATTTCTGAAAATGCTTATTGCAGGAACGGAGCAAATGTCGAAGGATACTTTTGCTGGGCTCTGTTCGATTACTTTGAATGGGGTATAGGATTGTTGCAACAATTTGGTCTTTATTATGTTGATTTCGAAGACAACTCCAAGCGCTACCCCAAGCAATCAGCTAAGTGGTTCCGTGATTTCAACAACAACAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

36.76

Weight (kDa)

8.64

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 4 - 260 5.9e-56 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 260 - 316 1.7e-15 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AclWI GGATC 2 cut(s) 283, 629
AcoI YGGCCR 1 cut(s) 692
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 103
AfeI AGCGCT 1 cut(s) 899
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 145, 833, 937
AjnI CCWGG 2 cut(s) 235, 670
AluBI AGCT 6 cut(s) 136, 220, 401, 487, 712, 917
AluI AGCT 6 cut(s) 136, 220, 401, 487, 712, 917
Alw21I GWGCWC 2 cut(s) 138, 248
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 2 cut(s) 283, 629
Aor51HI AGCGCT 1 cut(s) 899
AoxI GGCC 3 cut(s) 303, 642, 692
ApaI GGGCCC 1 cut(s) 307
ApeKI GCWGC 4 cut(s) 401, 404, 502, 703
ApoI RAATTY 1 cut(s) 544
Asp700I GAANNNNTTC 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 430
AspLEI GCGC 1 cut(s) 900
AspS9I GGNCC 4 cut(s) 303, 304, 446, 642
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 2 cut(s) 169, 502
AsuII TTCGAA 1 cut(s) 882
AvaII GGWCC 1 cut(s) 446
AvrII CCTAGG 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 307
BalI TGGCCA 1 cut(s) 694
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 3 cut(s) 138, 307, 817
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 2 cut(s) 138, 248
BbvI GCAGC 4 cut(s) 388, 416, 489, 690
BccI CCATC 3 cut(s) 188, 429, 436
BciT130I CCWGG 2 cut(s) 237, 672
BciVI GTATCC 1 cut(s) 794
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 2 cut(s) 431, 952
BfmI CTRYAG 3 cut(s) 402, 609, 704
BfoI RGCGCY 1 cut(s) 901
BfuI GTATCC 1 cut(s) 794
BglI GCCNNNNNGGC 1 cut(s) 700
BisI GCNGC 4 cut(s) 402, 405, 503, 704
BlnI CCTAGG 1 cut(s) 430
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 4 cut(s) 403, 406, 504, 705
Bme1390I CCNGG 3 cut(s) 237, 672, 682
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 4 cut(s) 303, 304, 446, 642
BmiI GGNNCC 6 cut(s) 297, 305, 306, 447, 686, 926
BmrFI CCNGG 3 cut(s) 237, 672, 682
BmsI GCATC 2 cut(s) 84, 106
BpiI GAAGAC 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 882
BpuMI CCSGG 1 cut(s) 682
BsaJI CCNNGG 3 cut(s) 299, 430, 638
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 237, 672
BseDI CCNNGG 3 cut(s) 299, 430, 638
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 123, 611
BseRI GAGGAG 2 cut(s) 591, 594
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 4 cut(s) 388, 416, 489, 690
BseYI CCCAGC 2 cut(s) 557, 810
BshFI GGCC 3 cut(s) 305, 644, 694
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 138, 248
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 3 cut(s) 305, 644, 694
Bsp119I TTCGAA 1 cut(s) 882
Bsp120I GGGCCC 1 cut(s) 303
Bsp1286I GDGCHC 4 cut(s) 138, 248, 307, 817
Bsp143I GATC 3 cut(s) 275, 394, 634
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 638
BspANI GGCC 3 cut(s) 305, 644, 694
BspCNI CTCAG 2 cut(s) 124, 612
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 6 cut(s) 297, 305, 306, 447, 686, 926
BspMAI CTGCAG 2 cut(s) 406, 708
BspPI GGATC 2 cut(s) 283, 629
BspT104I TTCGAA 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 299, 430, 638
BssMI GATC 3 cut(s) 275, 394, 634
BssT1I CCWWGG 2 cut(s) 430, 638
Bst2UI CCWGG 2 cut(s) 237, 672
Bst4CI ACNGT 2 cut(s) 417, 450
Bst6I CTCTTC 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 882
BstC8I GCNNGC 2 cut(s) 22, 248
BstDEI CTNAG 5 cut(s) 132, 360, 381, 620, 918
BstDSI CCRYGG 2 cut(s) 299, 638
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 440
BstH2I RGCGCY 1 cut(s) 901
BstHHI GCGC 1 cut(s) 900
BstKTI GATC 3 cut(s) 278, 397, 637
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 3 cut(s) 275, 394, 634
BstMWI GCNNNNNNNGC 2 cut(s) 700, 709
BstNI CCWGG 2 cut(s) 237, 672
BstSCI CCNGG 3 cut(s) 235, 670, 680
BstSFI CTRYAG 3 cut(s) 402, 609, 704
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 4 cut(s) 388, 416, 489, 690
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuI GTATCC 1 cut(s) 794
BsuRI GGCC 3 cut(s) 305, 644, 694
BtgI CCRYGG 2 cut(s) 299, 638
BtsCI GGATG 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 22, 248
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 900
Cfr13I GGNCC 4 cut(s) 303, 304, 446, 642
CviAII CATG 4 cut(s) 478, 584, 639, 715
DdeI CTNAG 5 cut(s) 132, 360, 381, 620, 918
DpnI GATC 3 cut(s) 277, 396, 636
DpnII GATC 3 cut(s) 275, 394, 634
EaeI YGGCCR 1 cut(s) 692
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 430, 638
Eco24I GRGCYC 3 cut(s) 138, 307, 817
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 446
Eco47III AGCGCT 1 cut(s) 899
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 235, 670
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 430, 638
EcoT22I ATGCAT 1 cut(s) 99
EcoT38I GRGCYC 3 cut(s) 138, 307, 817
ErhI CCWWGG 2 cut(s) 430, 638
FaeI CATG 4 cut(s) 481, 587, 642, 718
FaqI GGGAC 1 cut(s) 459
FatI CATG 4 cut(s) 477, 583, 638, 714
Fnu4HI GCNGC 4 cut(s) 402, 405, 503, 704
FokI GGATG 1 cut(s) 447
FriOI GRGCYC 3 cut(s) 138, 307, 817
Fsp4HI GCNGC 4 cut(s) 402, 405, 503, 704
FspBI CTAG 2 cut(s) 431, 952
GlaI GCGC 1 cut(s) 899
GluI GCNGC 4 cut(s) 402, 405, 503, 704
GsaI CCCAGC 2 cut(s) 561, 814
HaeII RGCGCY 1 cut(s) 901
HaeIII GGCC 3 cut(s) 305, 644, 694
HapII CCGG 1 cut(s) 681
HhaI GCGC 1 cut(s) 900
Hin1II CATG 4 cut(s) 481, 587, 642, 718
Hin6I GCGC 1 cut(s) 898
HinP1I GCGC 1 cut(s) 898
HinfI GANTC 2 cut(s) 345, 616
HpaII CCGG 1 cut(s) 681
HphI GGTGA 2 cut(s) 169, 502
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 621, 763
Hpy188III TCNNGA 2 cut(s) 40, 715
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 4 cut(s) 234, 487, 692, 791
HpyCH4III ACNGT 2 cut(s) 417, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 700, 709
HpyF3I CTNAG 5 cut(s) 132, 360, 381, 620, 918
Hsp92II CATG 4 cut(s) 481, 587, 642, 718
HspAI GCGC 1 cut(s) 898
Kzo9I GATC 3 cut(s) 275, 394, 634
LmnI GCTCC 1 cut(s) 785
Lsp1109I GCAGC 4 cut(s) 388, 416, 489, 690
LweI GCATC 2 cut(s) 84, 106
MaeI CTAG 2 cut(s) 431, 952
MaeIII GTNAC 3 cut(s) 37, 310, 384
MalI GATC 3 cut(s) 277, 396, 636
MboI GATC 3 cut(s) 275, 394, 634
MboII GAAGA 5 cut(s) 404, 533, 659, 739, 896
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 4 cut(s) 138, 248, 307, 817
MlsI TGGCCA 1 cut(s) 694
MluCI AATT 4 cut(s) 146, 339, 544, 857
MluNI TGGCCA 1 cut(s) 694
MnlI CCTC 5 cut(s) 80, 294, 609, 612, 615
Mox20I TGGCCA 1 cut(s) 694
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 116
MscI TGGCCA 1 cut(s) 694
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 286
Msp20I TGGCCA 1 cut(s) 694
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 3 cut(s) 237, 672, 682
MvaI CCWGG 2 cut(s) 237, 672
MwoI GCNNNNNNNGC 2 cut(s) 700, 709
NciI CCSGG 1 cut(s) 682
NcoI CCATGG 1 cut(s) 638
NdeII GATC 3 cut(s) 275, 394, 634
NlaIII CATG 4 cut(s) 481, 587, 642, 718
NlaIV GGNNCC 6 cut(s) 297, 305, 306, 447, 686, 926
NmuCI GTSAC 2 cut(s) 37, 384
NsiI ATGCAT 1 cut(s) 99
NspV TTCGAA 1 cut(s) 882
PagI TCATGA 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 345, 616
PfoI TCCNGGA 1 cut(s) 680
PkrI GCNGC 4 cut(s) 403, 406, 504, 705
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 235, 670
PspFI CCCAGC 2 cut(s) 557, 810
PspGI CCWGG 2 cut(s) 235, 670
PspN4I GGNNCC 6 cut(s) 297, 305, 306, 447, 686, 926
PspOMI GGGCCC 1 cut(s) 303
PspPI GGNCC 4 cut(s) 303, 304, 446, 642
PstI CTGCAG 2 cut(s) 406, 708
PsuI RGATCY 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 286
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 402, 405, 503, 704
Sau3AI GATC 3 cut(s) 275, 394, 634
Sau96I GGNCC 4 cut(s) 303, 304, 446, 642
ScrFI CCNGG 3 cut(s) 237, 672, 682
SduI GDGCHC 4 cut(s) 138, 248, 307, 817
SfaNI GCATC 2 cut(s) 84, 106
SfcI CTRYAG 3 cut(s) 402, 609, 704
SfuI TTCGAA 1 cut(s) 882
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 286
Sse9I AATT 4 cut(s) 146, 339, 544, 857
SspMI CTAG 2 cut(s) 431, 952
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 235, 670, 680
StyI CCWWGG 2 cut(s) 430, 638
TaaI ACNGT 2 cut(s) 417, 450
TaqI TCGA 5 cut(s) 286, 397, 795, 822, 882
TasI AATT 4 cut(s) 146, 339, 544, 857
TfiI GAWTC 2 cut(s) 345, 616
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 2 cut(s) 37, 384
TseI GCWGC 4 cut(s) 401, 404, 502, 703
Tsp45I GTSAC 2 cut(s) 37, 384
TspDTI ATGAA 2 cut(s) 572, 731
TspGWI ACGGA 2 cut(s) 798, 917
VpaK11BI GGWCC 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 1 cut(s) 544
XmaJI CCTAGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 431, 952
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.