Rh3CG223000

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000392
Physical Location & Seq
Forward (+)
20797497 .. 20800956
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG223000.1

Sequence Viewer

Length: 846 bp
ATGGAGTTTTCACCACCATGGTTAAGGATTTCACAGAGGATGATGTGTGCTATTGCTTTCATTGCCTGTATTTCACCAGTTACGGTGAATGCTAAGATAAAGTTCCAGGCATTGCACATCAATGCATCAAATCCTAAAGAATTAAAAGTGAAGTGGTCCGACTTCCCCAATGATTTTGCATTTGGAGTCAGCACTGCTGCTGCACAGATTGAAGGATCAACAAATAAAGCAGGACGAGGACCAAGTGTTTGGGACGAGTTTGTTAAGACATTCCCAGAACGCATTGCAGACCATTCTACCATGTCTGCGGCAATCGACTCATACAAGCGATACAAGGAAGATGTGAAGGCAGTGAAAGCCCTTGGAGTTGATTCTTATAGATTTTCCATCTCTTGGACCAGGATTCTTCCCAAGGGAACCTTGAGTGGAGGAATAAACCAAGAGGGTATTGATCACTACAACAACTTGATTGATGAACTAATCAAGAATGGCATCACACCCTATGTAACCATTTTACATTTTGATCCACCACAAGCCTTGACAGTCAAGTATGGAGGCTTTCTCGATCGCTCCTTTGTGAATGACTTTAAGGATTACAGTGAACTTTGCTTTAAGATCTATGGAGATAGAGTCAAAAATTGGATTACAATCAACGAGCCTTTTATTATAGCCAAAATGGGCTATGATCTTGGGGTTGCTCCACCAGGCAGGTGTTCCATACCAGGTGGTCATTTCCATTATTGCACAGCTGGAAATTCATCTACTGAACCTTACATTGTGGTTCATAACCTTCTCCTTGCCCATGCCACTGTTGTTAAGCTCTATAGAGAAAAGTTTCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

281

Amino Acids

31.55

Weight (kDa)

8.66

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 54 - 279 5.2e-81 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 699
Acc36I ACCTGC 1 cut(s) 699
AccB7I CCANNNNNTGG 1 cut(s) 393
AciI CCGC 1 cut(s) 308
AclWI GGATC 2 cut(s) 223, 518
AcsI RAATTY 1 cut(s) 754
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 4 cut(s) 105, 398, 703, 721
AluBI AGCT 2 cut(s) 749, 820
AluI AGCT 2 cut(s) 749, 820
AlwI GGATC 2 cut(s) 223, 518
ApeKI GCWGC 2 cut(s) 197, 200
ApoI RAATTY 1 cut(s) 754
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
Asp700I GAANNNNTTC 1 cut(s) 834
AspS9I GGNCC 3 cut(s) 156, 239, 396
AsuHPI GGTGA 3 cut(s) 3, 66, 97
AvaII GGWCC 3 cut(s) 156, 239, 396
BbvI GCAGC 2 cut(s) 184, 187
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 4 cut(s) 107, 400, 705, 723
BclI TGATCA 1 cut(s) 451
BfmI CTRYAG 1 cut(s) 823
BfuAI ACCTGC 1 cut(s) 699
BglII AGATCT 1 cut(s) 615
BisI GCNGC 3 cut(s) 198, 201, 309
BlsI GCNGC 3 cut(s) 199, 202, 310
Bme1390I CCNGG 4 cut(s) 107, 400, 705, 723
Bme18I GGWCC 3 cut(s) 156, 239, 396
BmgT120I GGNCC 3 cut(s) 156, 239, 396
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 4 cut(s) 107, 400, 705, 723
BmsI GCATC 2 cut(s) 134, 501
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpuEI CTTGAG 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 17, 361, 411
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 3 cut(s) 60, 110, 282
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 4 cut(s) 107, 400, 705, 723
BseDI CCNNGG 3 cut(s) 17, 361, 411
BseGI GGATG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 3 cut(s) 60, 110, 282
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 184, 187
BsgI GTGCAG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 568
BsiEI CGRYCG 1 cut(s) 568
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 94
Bsp143I GATC 6 cut(s) 215, 451, 523, 565, 615, 685
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 699
BspPI GGATC 2 cut(s) 223, 518
BsrDI GCAATG 3 cut(s) 60, 110, 282
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 17, 361, 411
BssMI GATC 6 cut(s) 215, 451, 523, 565, 615, 685
BssT1I CCWWGG 3 cut(s) 17, 361, 411
Bst2UI CCWGG 4 cut(s) 107, 400, 705, 723
Bst4CI ACNGT 4 cut(s) 85, 544, 599, 811
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 6 cut(s) 218, 454, 526, 568, 618, 688
BstMBI GATC 6 cut(s) 215, 451, 523, 565, 615, 685
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 2 cut(s) 62, 356
BstNI CCWGG 4 cut(s) 107, 400, 705, 723
BstSCI CCNGG 4 cut(s) 105, 398, 703, 721
BstSFI CTRYAG 1 cut(s) 823
BstV1I GCAGC 2 cut(s) 184, 187
BstX2I RGATCY 1 cut(s) 615
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 1 cut(s) 615
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 2 cut(s) 192, 357
BtsIMutI CAGTG 4 cut(s) 192, 357, 604, 807
BveI ACCTGC 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 156, 239, 396
CsiI ACCWGGT 1 cut(s) 721
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 3 cut(s) 18, 301, 803
CviJI RGCY 8 cut(s) 359, 536, 558, 658, 671, 681, 749, 820
CviKI_1 RGCY 8 cut(s) 359, 536, 558, 658, 671, 681, 749, 820
DdeI CTNAG 1 cut(s) 93
DpnI GATC 6 cut(s) 217, 453, 525, 567, 617, 687
DpnII GATC 6 cut(s) 215, 451, 523, 565, 615, 685
Eco130I CCWWGG 3 cut(s) 17, 361, 411
Eco47I GGWCC 3 cut(s) 156, 239, 396
EcoRII CCWGG 4 cut(s) 105, 398, 703, 721
EcoT14I CCWWGG 3 cut(s) 17, 361, 411
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 3 cut(s) 17, 361, 411
FaeI CATG 3 cut(s) 21, 304, 806
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 266
FatI CATG 3 cut(s) 17, 300, 802
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 198, 201, 309
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 198, 201, 309
GluI GCNGC 3 cut(s) 198, 201, 309
Hin1II CATG 3 cut(s) 21, 304, 806
HinfI GANTC 5 cut(s) 186, 317, 371, 403, 630
HphI GGTGA 3 cut(s) 3, 66, 97
Hpy166II GTNNAC 1 cut(s) 602
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 484, 563
Hpy8I GTNNAC 1 cut(s) 602
HpyAV CCTTC 3 cut(s) 206, 340, 800
HpyCH4III ACNGT 4 cut(s) 85, 544, 599, 811
HpyCH4V TGCA 6 cut(s) 115, 125, 179, 203, 287, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 356
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 3 cut(s) 21, 304, 806
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 6 cut(s) 215, 451, 523, 565, 615, 685
LmnI GCTCC 2 cut(s) 575, 703
Lsp1109I GCAGC 2 cut(s) 184, 187
LweI GCATC 2 cut(s) 134, 501
MabI ACCWGGT 1 cut(s) 721
MaeIII GTNAC 2 cut(s) 79, 505
MalI GATC 6 cut(s) 217, 453, 525, 567, 617, 687
MboI GATC 6 cut(s) 215, 451, 523, 565, 615, 685
MboII GAAGA 2 cut(s) 350, 398
MflI RGATCY 1 cut(s) 615
MluCI AATT 3 cut(s) 140, 637, 754
MlyI GAGTC 3 cut(s) 195, 311, 639
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 30, 230, 422, 436, 548
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 6 cut(s) 23, 143, 264, 588, 612, 816
MslI CAYNNNNRTG 2 cut(s) 16, 120
MspA1I CMGCKG 1 cut(s) 749
MspR9I CCNGG 4 cut(s) 107, 400, 705, 723
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 4 cut(s) 107, 400, 705, 723
MwoI GCNNNNNNNGC 2 cut(s) 62, 356
NcoI CCATGG 1 cut(s) 17
NdeII GATC 6 cut(s) 215, 451, 523, 565, 615, 685
NlaIII CATG 3 cut(s) 21, 304, 806
NlaIV GGNNCC 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 699
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 2 cut(s) 371, 403
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 3 cut(s) 199, 202, 310
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 3 cut(s) 194, 311, 638
PpsI GAGTC 3 cut(s) 194, 311, 638
Psp6I CCWGG 4 cut(s) 105, 398, 703, 721
PspGI CCWGG 4 cut(s) 105, 398, 703, 721
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 3 cut(s) 156, 239, 396
PsuI RGATCY 1 cut(s) 615
PvuI CGATCG 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 749
RseI CAYNNNNRTG 2 cut(s) 16, 120
SaqAI TTAA 6 cut(s) 23, 143, 264, 588, 612, 816
SatI GCNGC 3 cut(s) 198, 201, 309
Sau3AI GATC 6 cut(s) 215, 451, 523, 565, 615, 685
Sau96I GGNCC 3 cut(s) 156, 239, 396
SchI GAGTC 3 cut(s) 195, 311, 639
ScrFI CCNGG 4 cut(s) 107, 400, 705, 723
SetI ASST 7 cut(s) 422, 713, 727, 751, 772, 792, 822
SexAI ACCWGGT 1 cut(s) 721
SfaNI GCATC 2 cut(s) 134, 501
SfcI CTRYAG 1 cut(s) 823
SinI GGWCC 3 cut(s) 156, 239, 396
SmiMI CAYNNNNRTG 2 cut(s) 16, 120
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 3 cut(s) 140, 637, 754
SsiI CCGC 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 105, 398, 703, 721
StyI CCWWGG 3 cut(s) 17, 361, 411
TaaI ACNGT 4 cut(s) 85, 544, 599, 811
TaqI TCGA 2 cut(s) 315, 564
TasI AATT 3 cut(s) 140, 637, 754
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 2 cut(s) 371, 403
Tru1I TTAA 6 cut(s) 23, 143, 264, 588, 612, 816
Tru9I TTAA 6 cut(s) 23, 143, 264, 588, 612, 816
TscAI CASTG 4 cut(s) 199, 357, 604, 814
TseI GCWGC 2 cut(s) 197, 200
TspDTI ATGAA 4 cut(s) 49, 489, 747, 773
TspRI CASTG 4 cut(s) 199, 357, 604, 814
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 3 cut(s) 156, 239, 396
XapI RAATTY 1 cut(s) 754
XmnI GAANNNNTTC 1 cut(s) 834
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.