Rh7CG117500

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000392
Physical Location & Seq
Reverse (-)
9003817 .. 9004841
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG117500.1

Sequence Viewer

Length: 597 bp
ATGGCTTCATCAACCAAGTTTTTCTATGTTCTGGTTGCGGTTTGTGCCATCATCGCTTCCATTGCTTGCTGCACTTCCCGGGCTACTATTCCAGATTCAGATGGTGTGGCAGCGAATTTGACAGCTGGAGGATTCACTTCCGGATTGAATTTGTACAGTAGTGTATTTCTCGAAGAATTGGATGTTACAAGATCAGACTTCCCAGCTGATTTTACTTTTGGAGTCGCTACCTCTGCTGGACAGACTGAAGGGTCAGCCAGAGAAGGAGGGAGAGGACCAAGTACATGGGATCATCGCGTTGATATACTGCCAGATGCAATTATAAACAGCGACAAATTTTCTACAGCAATTGATTCATATAGACTATACAAGGAAGATATTAAGATTATCAAGGAACTCGGAGTAAATTCTTACCGCTTCTCCATCTCCTGGAGTAGGATATTACCAAAGGGAAGCTTGAGTGGGGGAATTAATCAAGAGGGTGTTGATCACTATAACAGCTTGATTGACGAATTGATCAGAAATGGTAAGAAGATACAAGTTTATGAATTCCAAAAGTTAAGTACTAGTAAAAATTTAAGTCTGGTTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

198

Amino Acids

21.41

Weight (kDa)

5.41

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 65 - 177 9e-38 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AasI GACNNNNNNGTC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 429
AccII CGCG 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 2 cut(s) 38, 415
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 6 cut(s) 115, 148, 335, 406, 548, 574
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 3 cut(s) 155, 283, 565
AfiI CCNNNNNNNGG 2 cut(s) 429, 435
AgsI TTSAA 1 cut(s) 148
AhlI ACTAGT 1 cut(s) 566
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 4 cut(s) 125, 206, 456, 501
AluI AGCT 4 cut(s) 125, 206, 456, 501
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 69, 110, 590
ApoI RAATTY 6 cut(s) 115, 148, 335, 406, 548, 574
AseI ATTAAT 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 79, 80
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 56, 122, 577
BccI CCATC 3 cut(s) 56, 95, 431
BciT130I CCWGG 1 cut(s) 430
BclI TGATCA 2 cut(s) 487, 516
BcnI CCSGG 2 cut(s) 79, 80
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 3 cut(s) 70, 111, 591
BlsI GCNGC 3 cut(s) 71, 112, 592
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 79, 80, 430
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 3 cut(s) 79, 80, 430
BmsI GCATC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 147, 451
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 79, 80
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 435
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 429, 435
BseMI GCAATG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 56, 122, 577
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 79, 141
BslI CCNNNNNNNGG 2 cut(s) 429, 435
BsoBI CYCGRG 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 153
Bsp143I GATC 4 cut(s) 191, 289, 487, 516
BspACI CCGC 2 cut(s) 38, 415
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 297
BspPI GGATC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 4 cut(s) 191, 289, 487, 516
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 4 cut(s) 194, 292, 490, 519
BstMBI GATC 4 cut(s) 191, 289, 487, 516
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 62, 233
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 3 cut(s) 77, 78, 428
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 56, 122, 577
BstXI CCANNNNNNTGG 1 cut(s) 285
BtgZI GCGATG 2 cut(s) 37, 278
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 275
Cfr9I CCCGGG 1 cut(s) 78
Csp6I GTAC 3 cut(s) 154, 282, 564
CviAII CATG 1 cut(s) 285
CviJI RGCY 7 cut(s) 5, 83, 125, 206, 257, 456, 501
CviKI_1 RGCY 7 cut(s) 5, 83, 125, 206, 257, 456, 501
CviQI GTAC 3 cut(s) 154, 282, 564
DpnI GATC 4 cut(s) 193, 291, 489, 518
DpnII GATC 4 cut(s) 191, 289, 487, 516
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 428
FaeI CATG 1 cut(s) 288
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 1 cut(s) 284
FbaI TGATCA 2 cut(s) 487, 516
Fnu4HI GCNGC 3 cut(s) 70, 111, 591
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 70, 111, 591
FspBI CTAG 1 cut(s) 567
GluI GCNGC 3 cut(s) 70, 111, 591
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 2 cut(s) 147, 451
HapII CCGG 2 cut(s) 79, 141
Hin1II CATG 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 4 cut(s) 95, 132, 222, 353
HpaII CCGG 2 cut(s) 79, 141
Hpy188I TCNGA 4 cut(s) 100, 196, 401, 521
Hpy188III TCNNGA 4 cut(s) 92, 141, 170, 476
HpyAV CCTTC 2 cut(s) 242, 257
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 72, 317, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 62, 233
Hsp92II CATG 1 cut(s) 288
Kpn2I TCCGGA 1 cut(s) 140
Ksp22I TGATCA 2 cut(s) 487, 516
Kzo9I GATC 4 cut(s) 191, 289, 487, 516
Lsp1109I GCAGC 3 cut(s) 56, 122, 577
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 193, 291, 489, 518
MboI GATC 4 cut(s) 191, 289, 487, 516
MboII GAAGA 3 cut(s) 185, 386, 544
MfeI CAATTG 1 cut(s) 348
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 5 cut(s) 122, 241, 260, 266, 472
MroI TCCGGA 1 cut(s) 140
MseI TTAA 4 cut(s) 381, 471, 560, 578
MspA1I CMGCKG 2 cut(s) 125, 206
MspI CCGG 2 cut(s) 79, 141
MspR9I CCNGG 3 cut(s) 79, 80, 430
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 62, 233
NciI CCSGG 2 cut(s) 79, 80
NdeII GATC 4 cut(s) 191, 289, 487, 516
NlaIII CATG 1 cut(s) 288
PfeI GAWTC 3 cut(s) 95, 132, 353
PflMI CCANNNNNTGG 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 3 cut(s) 71, 112, 592
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 471
PsiI TTATAA 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 428
PspPI GGNCC 1 cut(s) 275
PvuII CAGCTG 2 cut(s) 125, 206
RsaI GTAC 3 cut(s) 155, 283, 565
RsaNI GTAC 3 cut(s) 154, 282, 564
SaqAI TTAA 4 cut(s) 381, 471, 560, 578
SatI GCNGC 3 cut(s) 70, 111, 591
Sau3AI GATC 4 cut(s) 191, 289, 487, 516
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 3 cut(s) 79, 80, 430
SetI ASST 5 cut(s) 127, 208, 233, 458, 503
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 275
SmaI CCCGGG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SpeI ACTAGT 1 cut(s) 566
SsiI CCGC 2 cut(s) 38, 415
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 3 cut(s) 77, 78, 428
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 171
TatI WGTACW 3 cut(s) 153, 281, 563
TfiI GAWTC 3 cut(s) 95, 132, 353
Tru1I TTAA 4 cut(s) 381, 471, 560, 578
Tru9I TTAA 4 cut(s) 381, 471, 560, 578
TseI GCWGC 3 cut(s) 69, 110, 590
TspDTI ATGAA 2 cut(s) 345, 561
TspMI CCCGGG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 471
XagI CCTNNNNNAGG 1 cut(s) 433
XapI RAATTY 6 cut(s) 115, 148, 335, 406, 548, 574
XmaI CCCGGG 1 cut(s) 78
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.