Prupe.1G583900_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
47417636 .. 47421177
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G583900.1

Sequence Viewer

Length: 1512 bp
ATGGCATCCTCATCACCATTTTGTAGGATTTTACAAGGGATATGTGCCATTGCTTTGATTGCATCTTTGTCACAAGCTCCTGTGAATGCCGAGAGGAAGTTGCAGGGATTGCAAAATGCATCAAACTCTGAAGAATTGGAAGTAAAGAGGTCTGACTTCTCAAGCGATTTCGTGTTTGGAGTCTGTACTGCTGCTGCACAGATTGAAGGATCAGCAAAAGAAGCAGGAAAAGGACCAAGTGTTTGGGACCACCATATTGAGAAATACCCAGAAAGAATTCAGGACGGCTCTAACCTTACATCCATCGATTCATATAAGCGATACAAGGAAGATGTGAAGGCTCTGAAGGACCTTGGAGTTGATTCTTATAGATTTTCTATCTCCTGGACCAGGATTCTTCCTAAAGGAACTTTGAGTGGTGGAGTAAACCAGGAAGGCATTGACCACTACAACAGCTTGATTGATGAATTACTCAAGAACGGCATCACACCTTATGTGACCATATTACACTTCGACCCTCCACAAGCTTTGACAGACAAGTATGGAGGTGTCCTAAATCGCTCTTTCGTGGATGATTTCAAGGATTACAGTGAACTTTGTTTTAAAACCTATGGAGATAGGGTCAAGAATTGGATTACAATCAATGAGCCATATATTATGGCTAAGAATGGTTATGACTTGGGAGTTGCTCCACCAGCCAGGTGTTCTGTACGAGCACGTTTTCCATGTACGGTTGGTAATTCTGCTACTGAACCTTACATTGTGAGCCATAACCTTCTCCTTGCCCATGCTACAGTCGTCAAGCTCTACAAAGACAAGTTTCAAGCACAACAAGGTGGACAAATTGGAATCAGTCTTGTTGGACCATATTATGAGCCTTATTCAGATTCAGCAGAAGACAAAGCTGCAGTAAAGAGAATTATGGACTTTGAACTTGGATGGTACATGGAGCCATTAGTATACGGAGATTATCCCAAGTCTATGAGAGATTTAGTCAAGGACAGGCTACCCACTTTCACCCAAGAAGAGAAGAAATTGCTCAAGGGATCCTCCGATTTTATCGGCATCAATTACTATACCACAAGATATGTTAAAAACCAACCAGCAAGTACAGCTAAAGCAGCTGAAGGAAGCATTTTTGTCATCACTCATCCAGAAGGTCTGCAGAAACTTTTGGAGTTCATGAAGGAAAACTACCAAAGCCCTAAAATCATCATTACTGAAAATGGAATTACCGAGGCGAAAAATGATAAACGTGGACTTGATGTAGCACTAAAGGATCCACATAGAATTCAAAGTATTCTTTGGCATTTGTACCGGATCAAGATGGCAATAAAGAATGGTGTAAATGTCAAGGGATATTTTCACTACACTCTAAATGACGACTTTGAGTGGGGGGAAGGCTTTATTCCAAGATTCGGGCTTTACTACGTCGACTACAAAGACAATCTCAAACGCATTCCTAAAGACTCTGCGAAGTGGCTCCCTAAGTTCCTAAAGGGTGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

56.78

Weight (kDa)

7.98

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 960, 1434
AclWI GGATC 6 cut(s) 217, 1041, 1054, 1274, 1287, 1328
AcsI RAATTY 2 cut(s) 276, 1290
AcuI CTGAAG 3 cut(s) 150, 365, 1146
AfaI GTAC 6 cut(s) 187, 711, 730, 944, 1111, 1316
AfiI CCNNNNNNNGG 2 cut(s) 390, 1418
AgsI TTSAA 5 cut(s) 206, 580, 824, 932, 1295
AjnI CCWGG 4 cut(s) 383, 389, 429, 698
AluBI AGCT 7 cut(s) 77, 456, 527, 805, 905, 1115, 1124
AluI AGCT 7 cut(s) 77, 456, 527, 805, 905, 1115, 1124
Alw21I GWGCWC 1 cut(s) 718
AlwI GGATC 6 cut(s) 217, 1041, 1054, 1274, 1287, 1328
ApeKI GCWGC 4 cut(s) 191, 194, 905, 1121
ApoI RAATTY 2 cut(s) 276, 1290
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 5 cut(s) 233, 247, 349, 387, 863
AsuHPI GGTGA 2 cut(s) 6, 1009
AvaII GGWCC 5 cut(s) 233, 247, 349, 387, 863
BamHI GGATCC 2 cut(s) 1046, 1279
BarI GAAGNNNNNNTAC 2 cut(s) 1178, 1210
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 4 cut(s) 178, 181, 892, 1133
BccI CCATC 3 cut(s) 311, 933, 1321
BceAI ACGGC 2 cut(s) 301, 496
BciT130I CCWGG 4 cut(s) 385, 391, 431, 700
BfmI CTRYAG 3 cut(s) 792, 906, 1163
BisI GCNGC 4 cut(s) 192, 195, 906, 1122
BlsI GCNGC 4 cut(s) 193, 196, 907, 1123
Bme1390I CCNGG 4 cut(s) 385, 391, 431, 700
Bme18I GGWCC 5 cut(s) 233, 247, 349, 387, 863
BmgT120I GGNCC 5 cut(s) 233, 247, 349, 387, 863
BmiI GGNNCC 5 cut(s) 248, 951, 1048, 1281, 1484
BmrFI CCNGG 4 cut(s) 385, 391, 431, 700
BmsI GCATC 5 cut(s) 14, 71, 128, 492, 1074
BpiI GAAGAC 1 cut(s) 903
BpuEI CTTGAG 3 cut(s) 145, 458, 1025
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 638
BsaJI CCNNGG 2 cut(s) 352, 1236
BsaWI WCCGGW 1 cut(s) 1317
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 1418
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 638
BseBI CCWGG 4 cut(s) 385, 391, 431, 700
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 352, 1236
BseGI GGATG 5 cut(s) 5, 299, 577, 944, 1150
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 2 cut(s) 390, 1418
BseMI GCAATG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 178, 181, 892, 1133
BsgI GTGCAG 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 718
BsiSI CCGG 1 cut(s) 1318
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 390, 1418
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 2 cut(s) 91, 1458
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 4 cut(s) 209, 1046, 1279, 1320
BspDI ATCGAT 1 cut(s) 306
BspHI TCATGA 1 cut(s) 1182
BspLI GGNNCC 5 cut(s) 248, 951, 1048, 1281, 1484
BspMAI CTGCAG 2 cut(s) 910, 1167
BspPI GGATC 6 cut(s) 217, 1041, 1054, 1274, 1287, 1328
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 352, 1236
BssMI GATC 4 cut(s) 209, 1046, 1279, 1320
BssNAI GTATAC 1 cut(s) 961
BssT1I CCWWGG 1 cut(s) 352
Bst1107I GTATAC 1 cut(s) 961
Bst2UI CCWGG 4 cut(s) 385, 391, 431, 700
Bst4CI ACNGT 3 cut(s) 590, 733, 796
Bst6I CTCTTC 1 cut(s) 1020
BstAPI GCANNNNNTGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 663, 1488, 1509
BstENI CCTNNNNNAGG 1 cut(s) 388
BstF5I GGATG 5 cut(s) 5, 299, 577, 944, 1150
BstKTI GATC 4 cut(s) 212, 1049, 1282, 1323
BstMBI GATC 4 cut(s) 209, 1046, 1279, 1320
BstMWI GCNNNNNNNGC 6 cut(s) 59, 109, 221, 695, 1112, 1121
BstNI CCWGG 4 cut(s) 385, 391, 431, 700
BstSCI CCNGG 4 cut(s) 383, 389, 429, 698
BstSFI CTRYAG 3 cut(s) 792, 906, 1163
BstV1I GCAGC 4 cut(s) 178, 181, 892, 1133
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 2 cut(s) 1046, 1279
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 2 cut(s) 1046, 1279
BstZ17I GTATAC 1 cut(s) 961
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 5 cut(s) 5, 299, 577, 944, 1150
BtsIMutI CAGTG 1 cut(s) 595
CciI TCATGA 1 cut(s) 1182
Cfr13I GGNCC 5 cut(s) 233, 247, 349, 387, 863
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 6 cut(s) 186, 710, 729, 943, 1110, 1315
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 4 cut(s) 726, 788, 946, 1183
CviQI GTAC 6 cut(s) 186, 710, 729, 943, 1110, 1315
DdeI CTNAG 3 cut(s) 663, 1488, 1509
DpnI GATC 4 cut(s) 211, 1048, 1281, 1322
DpnII GATC 4 cut(s) 209, 1046, 1279, 1320
DraI TTTAAA 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 1020
EarI CTCTTC 1 cut(s) 1020
Eco130I CCWWGG 1 cut(s) 352
Eco47I GGWCC 5 cut(s) 233, 247, 349, 387, 863
Eco57I CTGAAG 3 cut(s) 150, 365, 1146
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 2 cut(s) 276, 1290
EcoRII CCWGG 4 cut(s) 383, 389, 429, 698
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 4 cut(s) 729, 791, 949, 1186
FaqI GGGAC 1 cut(s) 260
FatI CATG 4 cut(s) 725, 787, 945, 1182
FblI GTMKAC 2 cut(s) 960, 1434
Fnu4HI GCNGC 4 cut(s) 192, 195, 906, 1122
FokI GGATG 4 cut(s) 286, 584, 951, 1137
Fsp4HI GCNGC 4 cut(s) 192, 195, 906, 1122
GluI GCNGC 4 cut(s) 192, 195, 906, 1122
HapII CCGG 1 cut(s) 1318
Hin1II CATG 4 cut(s) 729, 791, 949, 1186
HincII GTYRAC 1 cut(s) 1435
HindII GTYRAC 1 cut(s) 1435
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 8 cut(s) 180, 308, 362, 394, 849, 887, 1416, 1469
HpaII CCGG 1 cut(s) 1318
HphI GGTGA 2 cut(s) 6, 1009
Hpy166II GTNNAC 6 cut(s) 427, 593, 839, 961, 1259, 1435
Hpy188I TCNGA 5 cut(s) 130, 154, 345, 886, 1054
Hpy188III TCNNGA 6 cut(s) 281, 475, 625, 1154, 1183, 1324
Hpy8I GTNNAC 6 cut(s) 427, 593, 839, 961, 1259, 1435
Hpy99I CGWCG 1 cut(s) 1436
HpyAV CCTTC 9 cut(s) 200, 331, 340, 428, 785, 1121, 1151, 1180, 1394
HpyCH4III ACNGT 3 cut(s) 590, 733, 796
HpyCH4IV ACGT 3 cut(s) 718, 1255, 1431
HpyCH4V TGCA 7 cut(s) 62, 103, 112, 119, 197, 908, 1165
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 109, 221, 695, 1112, 1121
HpyF3I CTNAG 3 cut(s) 663, 1488, 1509
HpySE526I ACGT 3 cut(s) 718, 1255, 1431
Hsp92II CATG 4 cut(s) 729, 791, 949, 1186
Kzo9I GATC 4 cut(s) 209, 1046, 1279, 1320
LmnI GCTCC 4 cut(s) 82, 694, 949, 1488
Lsp1109I GCAGC 4 cut(s) 178, 181, 892, 1133
LweI GCATC 5 cut(s) 14, 71, 128, 492, 1074
MaeII ACGT 3 cut(s) 718, 1255, 1431
MaeIII GTNAC 2 cut(s) 69, 496
MalI GATC 4 cut(s) 211, 1048, 1281, 1322
MboI GATC 4 cut(s) 209, 1046, 1279, 1320
MboII GAAGA 6 cut(s) 143, 341, 389, 908, 1037, 1042
MflI RGATCY 2 cut(s) 1046, 1279
MhlI GDGCHC 1 cut(s) 718
MlyI GAGTC 2 cut(s) 189, 1463
MmeI TCCRAC 1 cut(s) 841
MnlI CCTC 8 cut(s) 19, 87, 141, 528, 539, 1060, 1231, 1498
Mph1103I ATGCAT 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 2 cut(s) 603, 1092
MspA1I CMGCKG 1 cut(s) 1124
MspI CCGG 1 cut(s) 1318
MspR9I CCNGG 4 cut(s) 385, 391, 431, 700
Mva1269I GAATGC 2 cut(s) 91, 1458
MvaI CCWGG 4 cut(s) 385, 391, 431, 700
MwoI GCNNNNNNNGC 6 cut(s) 59, 109, 221, 695, 1112, 1121
NdeII GATC 4 cut(s) 209, 1046, 1279, 1320
NlaIII CATG 4 cut(s) 729, 791, 949, 1186
NlaIV GGNNCC 5 cut(s) 248, 951, 1048, 1281, 1484
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 2 cut(s) 69, 496
NsiI ATGCAT 1 cut(s) 121
PagI TCATGA 1 cut(s) 1182
PctI GAATGC 2 cut(s) 91, 1458
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 6 cut(s) 308, 362, 394, 849, 887, 1416
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 4 cut(s) 193, 196, 907, 1123
PleI GAGTC 2 cut(s) 188, 1463
PpsI GAGTC 2 cut(s) 188, 1463
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 4 cut(s) 383, 389, 429, 698
PspGI CCWGG 4 cut(s) 383, 389, 429, 698
PspN4I GGNNCC 5 cut(s) 248, 951, 1048, 1281, 1484
PspPI GGNCC 5 cut(s) 233, 247, 349, 387, 863
PspPPI RGGWCCY 1 cut(s) 349
PstI CTGCAG 2 cut(s) 910, 1167
PsuI RGATCY 2 cut(s) 1046, 1279
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 6 cut(s) 187, 711, 730, 944, 1111, 1316
RsaNI GTAC 6 cut(s) 186, 710, 729, 943, 1110, 1315
SalI GTCGAC 1 cut(s) 1433
SaqAI TTAA 2 cut(s) 603, 1092
SatI GCNGC 4 cut(s) 192, 195, 906, 1122
Sau3AI GATC 4 cut(s) 209, 1046, 1279, 1320
Sau96I GGNCC 5 cut(s) 233, 247, 349, 387, 863
SchI GAGTC 2 cut(s) 189, 1463
ScrFI CCNGG 4 cut(s) 385, 391, 431, 700
SduI GDGCHC 1 cut(s) 718
SfaNI GCATC 5 cut(s) 14, 71, 128, 492, 1074
SfcI CTRYAG 3 cut(s) 792, 906, 1163
SinI GGWCC 5 cut(s) 233, 247, 349, 387, 863
SmlI CTYRAG 3 cut(s) 160, 473, 1040
SmoI CTYRAG 3 cut(s) 160, 473, 1040
StyD4I CCNGG 4 cut(s) 383, 389, 429, 698
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 590, 733, 796
TaiI ACGT 3 cut(s) 721, 1258, 1434
TaqI TCGA 3 cut(s) 306, 513, 1434
TatI WGTACW 2 cut(s) 185, 1109
TfiI GAWTC 6 cut(s) 308, 362, 394, 849, 887, 1416
Tru1I TTAA 2 cut(s) 603, 1092
Tru9I TTAA 2 cut(s) 603, 1092
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 69, 496
TseI GCWGC 4 cut(s) 191, 194, 905, 1121
Tsp45I GTSAC 2 cut(s) 69, 496
TspDTI ATGAA 4 cut(s) 300, 480, 1171, 1199
TspGWI ACGGA 1 cut(s) 978
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 5 cut(s) 233, 247, 349, 387, 863
XagI CCTNNNNNAGG 1 cut(s) 388
XapI RAATTY 2 cut(s) 276, 1290
XmiI GTMKAC 2 cut(s) 960, 1434
XmnI GAANNNNTTC 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.