Rmu_sc0001786.1_g000011

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001786.1
OG0000392
Physical Location & Seq
Forward (+)
46193 .. 48952
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001786.1_g000011.1.cds

Sequence Viewer

Length: 468 bp
atgttagcacgaggtggcctaatgggtaagcctgcactctactgcaggtttatggaaccaatagtatttggagattatccaaagattatgagagatttggtcaaggaaaggctaccccttttcaccgaagaagagaaaaaattgattaagggatccttcgatttcattggcatcaactattataccacgagatatggtaaaaatgttccagcaagtcaagctgaaccattgagttatcacaatgacgtcttggctacttcaactgaaacaaggtatgctgaagcgacacggctgggttttacgaagtggttttcttgtgcttttaaggctatggattcatttgagccggatggaaatgggacaaatggcgcaaatgtagaaaacggcgcaaatggagaaaacagggctgatggaaacggggcagaacatgcattgccacccccacccctgttatcccaccagatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

5.92

Isoelectric Point (pI)

21.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 36
AclWI GGATC 2 cut(s) 147, 160
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 261
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 2 cut(s) 147, 160
AoxI GGCC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 371, 389
AsuHPI GGTGA 1 cut(s) 115
BamHI GGATCC 1 cut(s) 152
BauI CACGAG 2 cut(s) 9, 187
BccI CCATC 2 cut(s) 344, 404
BceAI ACGGC 2 cut(s) 305, 400
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 57, 154
BmsI GCATC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 431
BseGI GGATG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 431
BseYI CCCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 152
BspANI GGCC 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 57, 154
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 2 cut(s) 147, 160
BsrDI GCAATG 1 cut(s) 431
BssMI GATC 1 cut(s) 152
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 2 cut(s) 9, 187
Bst2BI CACGAG 2 cut(s) 9, 187
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 355
BstHHI GCGC 2 cut(s) 371, 389
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 3 cut(s) 218, 326, 428
BstNSI RCATGY 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 2 cut(s) 371, 389
CviAII CATG 1 cut(s) 428
CviJI RGCY 9 cut(s) 18, 31, 112, 221, 254, 292, 329, 346, 407
CviKI_1 RGCY 9 cut(s) 18, 31, 112, 221, 254, 292, 329, 346, 407
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DraIII CACNNNGTG 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 433
FaeI CATG 1 cut(s) 431
FaiI YATR 7 cut(s) 53, 89, 183, 195, 276, 332, 429
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 373
FatI CATG 1 cut(s) 427
FokI GGATG 1 cut(s) 362
GlaI GCGC 2 cut(s) 370, 388
GsaI CCCAGC 1 cut(s) 296
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 347
HhaI GCGC 2 cut(s) 371, 389
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 431
Hin6I GCGC 2 cut(s) 369, 387
HinP1I GCGC 2 cut(s) 369, 387
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 35, 45, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 326, 428
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 431
HspAI GCGC 2 cut(s) 369, 387
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 31, 45, 222, 278, 360, 388, 461
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 140, 143
MflI RGATCY 1 cut(s) 152
MluCI AATT 1 cut(s) 140
MnlI CCTC 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 2 cut(s) 147, 324
MspI CCGG 1 cut(s) 347
MwoI GCNNNNNNNGC 3 cut(s) 218, 326, 428
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 2 cut(s) 57, 154
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 1 cut(s) 431
PfeI GAWTC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 57, 154
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 152
SaqAI TTAA 2 cut(s) 147, 324
Sau3AI GATC 1 cut(s) 152
SetI ASST 5 cut(s) 16, 50, 223, 249, 275
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 140
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 140
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 147, 324
Tru9I TTAA 2 cut(s) 147, 324
TspDTI ATGAA 2 cut(s) 154, 327
XceI RCATGY 1 cut(s) 431
ZraI GACGTC 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.