Rh5AG369500

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000392
Physical Location & Seq
Forward (+)
62517741 .. 62518227
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG369500.1

Sequence Viewer

Length: 309 bp
ATGGCTTCGATAACCTGCATGCCTGTCGAGGCTACTACAAGTTTGGATGGTATCGTTGCAGTTGCGGCGAATTTGACAGTAGGCGGAATGACCTTCGGATTGAATTTAAATAGTACTTCATTTCTCAAAGAATTGAATGTTACGAAATCAGACTTCCCAACTAAATTTGCTTTCGGAATGGCTACTTCTGCTGCACAGATTGAAGGGGCGGCCAAAGAATTTGTGAGAGGACCAAGTACATGGGATCATCGCGTTGATATATACTCCCACGTAGTATTCAAACCAGCGACAATTCTCTACAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

102

Amino Acids

10.88

Weight (kDa)

6.02

Isoelectric Point (pI)

23.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 49 - 87 8.8e-08 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 65, 84, 209
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 4 cut(s) 70, 103, 164, 218
AfaI GTAC 2 cut(s) 115, 238
AgsI TTSAA 4 cut(s) 103, 136, 203, 280
AlwI GGATC 1 cut(s) 252
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 4 cut(s) 70, 103, 164, 218
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BfmI CTRYAG 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 3 cut(s) 66, 192, 210
BlsI GCNGC 3 cut(s) 67, 193, 211
BmcAI AGTACT 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 271
BseGI GGATG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 212
BsnI GGCC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 3 cut(s) 65, 84, 209
BspANI GGCC 1 cut(s) 212
BspFNI CGCG 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 252
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 65, 188
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 298
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 52
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 114, 237
CviAII CATG 2 cut(s) 19, 240
CviJI RGCY 4 cut(s) 5, 32, 182, 212
CviKI_1 RGCY 4 cut(s) 5, 32, 182, 212
CviQI GTAC 2 cut(s) 114, 237
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraI TTTAAA 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 230
FaeI CATG 2 cut(s) 22, 243
FaiI YATR 4 cut(s) 20, 241, 260, 262
FatI CATG 2 cut(s) 18, 239
Fnu4HI GCNGC 3 cut(s) 66, 192, 210
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 66, 192, 210
GluI GCNGC 3 cut(s) 66, 192, 210
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 2 cut(s) 22, 243
Hpy188I TCNGA 3 cut(s) 98, 151, 176
HpyAV CCTTC 2 cut(s) 103, 197
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 18, 59, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 188
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 22, 243
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 3 cut(s) 28, 36, 297
Lsp1109I GCAGC 1 cut(s) 178
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MfeI CAATTG 1 cut(s) 304
MluCI AATT 7 cut(s) 70, 103, 131, 164, 218, 291, 304
MnlI CCTC 2 cut(s) 22, 221
MseI TTAA 1 cut(s) 107
MunI CAATTG 1 cut(s) 304
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 65, 188
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 22, 243
NspI RCATGY 1 cut(s) 22
PaeI GCATGC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 67, 193, 211
Ppu21I YACGTR 1 cut(s) 271
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 2 cut(s) 115, 238
RsaNI GTAC 2 cut(s) 114, 237
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 3 cut(s) 66, 192, 210
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 230
ScaI AGTACT 1 cut(s) 115
SetI ASST 3 cut(s) 17, 95, 273
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 1 cut(s) 230
SmiI ATTTAAAT 1 cut(s) 108
SphI GCATGC 1 cut(s) 22
Sse9I AATT 7 cut(s) 70, 103, 131, 164, 218, 291, 304
SsiI CCGC 3 cut(s) 65, 84, 209
SwaI ATTTAAAT 1 cut(s) 108
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 8, 27
TasI AATT 7 cut(s) 70, 103, 131, 164, 218, 291, 304
TatI WGTACW 2 cut(s) 113, 236
TauI GCSGC 2 cut(s) 68, 212
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 4 cut(s) 70, 103, 164, 218
XceI RCATGY 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.