Rh5BG469800

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
74823899 .. 74824640
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG469800.1

Sequence Viewer

Length: 264 bp
ATGAAGCAAAACTACCAAAGTCCTAAAATCTACATTTCCAAAAATGGAATTATAGAAGAAAATGACGATAATCTTGGACTCGATGTAGCAGTCAAGGATCCACATAGAATTGAATGCATTCTTCGACACTTGTATCGGATCAGTATGGCAATGAAGAATGGGGTGAATGTCAAAGGATATTTCCACTGGGCTCTATTTGATGACTTTGAGTGGGGGGAAGGCTATCTTGCAAGGGTATGCGGAAGCGACACAGCTGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

10.01

Weight (kDa)

5.83

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 1 - 78 3.6e-17 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AclWI GGATC 3 cut(s) 92, 105, 146
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 3 cut(s) 92, 105, 146
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 116, 149
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 193
BarI GAAGNNNNNNTAC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 191
BseYI CCCAGC 1 cut(s) 254
BsmI GAATGC 2 cut(s) 117, 119
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 97, 138
BspACI CCGC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 3 cut(s) 92, 105, 146
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 191
BssMI GATC 2 cut(s) 97, 138
BstKTI GATC 2 cut(s) 100, 141
BstMBI GATC 2 cut(s) 97, 138
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 184
CviJI RGCY 3 cut(s) 191, 222, 254
CviKI_1 RGCY 3 cut(s) 191, 222, 254
DpnI GATC 2 cut(s) 99, 140
DpnII GATC 2 cut(s) 97, 138
Eco24I GRGCYC 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 193
FaiI YATR 4 cut(s) 53, 105, 146, 238
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FriOI GRGCYC 1 cut(s) 193
GsaI CCCAGC 1 cut(s) 258
HinfI GANTC 1 cut(s) 78
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 117, 230
Kzo9I GATC 2 cut(s) 97, 138
LpnPI CCDG 2 cut(s) 172, 240
MalI GATC 2 cut(s) 99, 140
MboI GATC 2 cut(s) 97, 138
MboII GAAGA 3 cut(s) 68, 113, 166
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 2 cut(s) 48, 108
MlyI GAGTC 1 cut(s) 72
Mph1103I ATGCAT 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 254
Mva1269I GAATGC 2 cut(s) 117, 119
NdeII GATC 2 cut(s) 97, 138
NlaIV GGNNCC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 119
PctI GAATGC 2 cut(s) 117, 119
PdmI GAANNNNTTC 1 cut(s) 117
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 254
Sau3AI GATC 2 cut(s) 97, 138
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 1 cut(s) 193
SetI ASST 1 cut(s) 256
SgeI CNNG 7 cut(s) 86, 92, 106, 142, 199, 239, 243
Sse9I AATT 2 cut(s) 48, 108
SsiI CCGC 1 cut(s) 240
TaqI TCGA 2 cut(s) 81, 124
TasI AATT 2 cut(s) 48, 108
TscAI CASTG 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 17, 167
TspRI CASTG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.