FvH4_5g07180

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000392
Physical Location & Seq
Reverse (-)
4203181 .. 4203796
616 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07180.t1

Sequence Viewer

Length: 312 bp
ATGGTTAAGGATTCCACAAAGGATAATATGTGCATTGTTTTGATCGCCTATTACTCACAAGCTGCTGTGGATGCTCATGAGGGGTTGCATGCCAATGCATCAGACCCTGAAGAATTGAACGTGAAATGGACCGACTTCCCTAATGACTTTGTTTTTGGAGTCACCACTGCTGCTGCGCAGATTGAAGGATCAGCAAACGAATTTGGAAAAGGACCAAGTGTTTGGGACAAGATTGTTGAGGTCCCTGAGAATTATGGACAAATCTACCATGTCTACGAGCATAGATTCATACAAGCGATACAAGGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

4.56

Isoelectric Point (pI)

17.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 45 - 85 5.5e-11 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
AccI GTMKAC 1 cut(s) 273
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 2 cut(s) 118, 185
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 62, 170, 173
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 204, 236
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 129, 212, 241
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 3 cut(s) 129, 212, 241
BbvI GCAGC 3 cut(s) 49, 157, 160
BisI GCNGC 3 cut(s) 63, 171, 174
BlsI GCNGC 3 cut(s) 64, 172, 175
Bme18I GGWCC 3 cut(s) 129, 212, 241
BmgT120I GGNCC 3 cut(s) 129, 212, 241
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 2 cut(s) 61, 107
BseGI GGATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 3 cut(s) 49, 157, 160
BslFI GGGAC 2 cut(s) 227, 239
BsmFI GGGAC 2 cut(s) 227, 239
Bsp143I GATC 2 cut(s) 42, 188
BspCNI CTCAG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 196
BssMI GATC 2 cut(s) 42, 188
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 45, 191
BstMBI GATC 2 cut(s) 42, 188
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 49, 157, 160
BstXI CCANNNNNNTGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 107
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 129, 212, 241
CviAII CATG 3 cut(s) 77, 89, 269
CviJI RGCY 1 cut(s) 62
CviKI_1 RGCY 1 cut(s) 62
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 44, 190
DpnII GATC 2 cut(s) 42, 188
Eco47I GGWCC 3 cut(s) 129, 212, 241
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 3 cut(s) 80, 92, 272
FaiI YATR 7 cut(s) 29, 78, 90, 255, 270, 282, 290
FaqI GGGAC 2 cut(s) 227, 239
FatI CATG 3 cut(s) 76, 88, 268
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 63, 171, 174
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 63, 171, 174
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
GluI GCNGC 3 cut(s) 63, 171, 174
HhaI GCGC 1 cut(s) 178
Hin1II CATG 3 cut(s) 80, 92, 272
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 3 cut(s) 11, 159, 285
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 33, 88, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 3 cut(s) 80, 92, 272
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 42, 188
LpnPI CCDG 2 cut(s) 120, 258
Lsp1109I GCAGC 3 cut(s) 49, 157, 160
LweI GCATC 2 cut(s) 61, 107
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 44, 190
MboI GATC 2 cut(s) 42, 188
MboII GAAGA 1 cut(s) 122
MluCI AATT 3 cut(s) 113, 200, 250
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 2 cut(s) 73, 232
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 42, 188
NlaIII CATG 3 cut(s) 80, 92, 272
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 92
PaeI GCATGC 1 cut(s) 92
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 2 cut(s) 11, 285
PkrI GCNGC 3 cut(s) 64, 172, 175
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 3 cut(s) 129, 212, 241
PspPPI RGGWCCY 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 3 cut(s) 63, 171, 174
Sau3AI GATC 2 cut(s) 42, 188
Sau96I GGNCC 3 cut(s) 129, 212, 241
SchI GAGTC 1 cut(s) 168
SetI ASST 4 cut(s) 64, 123, 243, 307
SfaNI GCATC 2 cut(s) 61, 107
SinI GGWCC 3 cut(s) 129, 212, 241
SmiMI CAYNNNNRTG 1 cut(s) 93
SphI GCATGC 1 cut(s) 92
Sse9I AATT 3 cut(s) 113, 200, 250
TaiI ACGT 1 cut(s) 123
TaqII GACCGA 1 cut(s) 146
TasI AATT 3 cut(s) 113, 200, 250
TfiI GAWTC 2 cut(s) 11, 285
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 62, 170, 173
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 277
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 3 cut(s) 129, 212, 241
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.