Rroxscaffold_4G00306640

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000392
Physical Location & Seq
Reverse (-)
27603900 .. 27608351
4452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306640.1

Sequence Viewer

Length: 435 bp
ATGGTGACGTTCAAAGACCGGGAGCTGCAGGCTTGGAGATACTACCCTTCGGTTCGGGTTAGTATATATGTTGAGCCTAATTCAAATACAACAGAAGACAAAGCTGCAACAAAACGAATTTTAGACTTCGAACTTGGATGGTTAGTGACATCTGCTTTGAACCTAAGTTTACTTGCTGATGAACAAAATCGTTGTGTCTTGATGAACACGTCGAGTCCTCTAAATGATTCCAGCCTTGGAGGCCAAGTCTACTTGATGCCTAAGCTTAGTCTCTATCTTTCAAGCTTCGATTCGTCCTTCACACGTGAAATTGTTGCAAGCTACCTTGGGCGAATCCTTCCCCGACCTCCGGGCAACAAACCTCTCAAGAAATTCCATCTATGGTGGCTGGAATCTTTAACTCCGACCAAGGCGATTTGCAGCTCGGCCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

144

Amino Acids

16.28

Weight (kDa)

8.93

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 431
AciI CCGC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 2 cut(s) 117, 371
AcvI CACGTG 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 2 cut(s) 207, 302
AgsI TTSAA 4 cut(s) 13, 84, 160, 282
AjiI CACGTC 1 cut(s) 210
AluBI AGCT 6 cut(s) 25, 104, 265, 285, 321, 423
AluI AGCT 6 cut(s) 25, 104, 265, 285, 321, 423
Alw26I GTCTC 1 cut(s) 275
AoxI GGCC 2 cut(s) 241, 426
ApeKI GCWGC 3 cut(s) 25, 104, 420
ApoI RAATTY 2 cut(s) 117, 371
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AsuC2I CCSGG 2 cut(s) 20, 351
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 129
BbrPI CACGTG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 12, 91
BccI CCATC 2 cut(s) 132, 384
BcnI CCSGG 2 cut(s) 20, 351
BcoDI GTCTC 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 4 cut(s) 26, 105, 421, 429
BlsI GCNGC 4 cut(s) 27, 106, 422, 430
Bme1390I CCNGG 2 cut(s) 20, 351
BmgBI CACGTC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 20, 351
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 20, 351
BsaAI YACGTR 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 235, 325, 408
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 349
BseDI CCNNGG 3 cut(s) 235, 325, 408
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 349
BseX3I CGGCCG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 12, 91
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 243, 428
BsiEI CGRYCG 1 cut(s) 429
BsiSI CCGG 2 cut(s) 19, 350
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 2 cut(s) 243, 428
Bsp119I TTCGAA 1 cut(s) 129
BspACI CCGC 1 cut(s) 429
BspANI GGCC 2 cut(s) 243, 428
BspFNI CGCG 1 cut(s) 431
BspMAI CTGCAG 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 235, 325, 408
BssT1I CCWWGG 3 cut(s) 235, 325, 408
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 30, 319
BstDEI CTNAG 3 cut(s) 164, 261, 266
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 1 cut(s) 431
BstMAI GTCTC 1 cut(s) 275
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 18, 349
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 12, 91
BstV2I GAAGAC 1 cut(s) 102
BstZI CGGCCG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 243, 428
BtrI CACGTC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 30, 319
DdeI CTNAG 3 cut(s) 164, 261, 266
EaeI YGGCCR 1 cut(s) 426
EagI CGGCCG 1 cut(s) 426
EclXI CGGCCG 1 cut(s) 426
Eco130I CCWWGG 3 cut(s) 235, 325, 408
Eco52I CGGCCG 1 cut(s) 426
Eco72I CACGTG 1 cut(s) 305
EcoT14I CCWWGG 3 cut(s) 235, 325, 408
ErhI CCWWGG 3 cut(s) 235, 325, 408
FaiI YATR 4 cut(s) 65, 67, 69, 382
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 26, 105, 421, 429
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 26, 105, 421, 429
GluI GCNGC 4 cut(s) 26, 105, 421, 429
HaeIII GGCC 2 cut(s) 243, 428
HapII CCGG 2 cut(s) 19, 350
HindIII AAGCTT 2 cut(s) 263, 283
HinfI GANTC 5 cut(s) 214, 227, 290, 333, 392
HpaII CCGG 2 cut(s) 19, 350
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 170, 250
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 2 cut(s) 199, 367
Hpy8I GTNNAC 2 cut(s) 170, 250
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 57, 307, 347
HpyCH4IV ACGT 3 cut(s) 8, 209, 304
HpyCH4V TGCA 4 cut(s) 28, 107, 317, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 3 cut(s) 164, 261, 266
HpySE526I ACGT 3 cut(s) 8, 209, 304
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 5 cut(s) 14, 32, 244, 363, 374
Lsp1109I GCAGC 2 cut(s) 12, 91
LweI GCATC 1 cut(s) 246
MaeII ACGT 3 cut(s) 8, 209, 304
MaeIII GTNAC 2 cut(s) 4, 145
MboII GAAGA 1 cut(s) 107
MluCI AATT 4 cut(s) 79, 117, 309, 371
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 4 cut(s) 228, 233, 357, 372
MseI TTAA 1 cut(s) 398
MspI CCGG 2 cut(s) 19, 350
MspR9I CCNGG 2 cut(s) 20, 351
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 2 cut(s) 20, 351
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 4, 145
NspV TTCGAA 1 cut(s) 129
PfeI GAWTC 4 cut(s) 227, 290, 333, 392
PkrI GCNGC 4 cut(s) 27, 106, 422, 430
PleI GAGTC 1 cut(s) 222
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 305
PspCI CACGTG 1 cut(s) 305
PstI CTGCAG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 4 cut(s) 26, 105, 421, 429
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 20, 351
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 4 cut(s) 79, 117, 309, 371
SsiI CCGC 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 18, 349
StyI CCWWGG 3 cut(s) 235, 325, 408
TaiI ACGT 3 cut(s) 11, 212, 307
TaqI TCGA 3 cut(s) 129, 212, 288
TasI AATT 4 cut(s) 79, 117, 309, 371
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 4 cut(s) 227, 290, 333, 392
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TseFI GTSAC 2 cut(s) 4, 145
TseI GCWGC 3 cut(s) 25, 104, 420
Tsp45I GTSAC 2 cut(s) 4, 145
TspDTI ATGAA 2 cut(s) 195, 218
XapI RAATTY 2 cut(s) 117, 371
XmiI GTMKAC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.