MD02G1234600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000571
Physical Location & Seq
Reverse (-)
28115481 .. 28115951
471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1234600.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGACTGTGTTGGGAGAAGATGCTTTCTGACGCAGATGAGTTTTTTCAATGAAATGGTGGAAAGGGGTGTCATTCCTGGTTTTTATACTTTCACAACACTCATTCATGGTTATTGCAAGCATGGGAATATGACCAAATCTCTCAATCTGTTTGATGCAATGACAAAAAGAAATATTAAGCCTGATATAGTCACATACAACACATTGTTTGATGGCTTCTGCAAACTAGGTGGAATGGATAAAGCTAAGGAGTTATGGGGTGACATGGTTTCAAGAAGGATACTACCCAACCACATTTCATATGGCATTCTAATTAATGGATTTTGTAGCATGGGGAACGTGCATGAGGCGTTGAGTTTATGGGACCAGATGATTGAAGAAGGTATCAAACCCCACTCTAGTTACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

7.67

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 14 - 40 1.3e-07 PPR repeat family
PPR_long PF17177 14 - 126 7.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 16 - 70 2.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 22 - 54 1.3e-09 PPR repeat
PPR_2 PF13041 29 - 75 3.4e-19 PPR repeat family
PPR PF01535 29 - 59 1.4e-08 PPR repeat
PPR_1 PF12854 57 - 90 4.9e-11 PPR repeat
PPR_2 PF13041 61 - 109 2.3e-18 PPR repeat family
PPR PF01535 64 - 94 2.2e-08 PPR repeat
PPR_1 PF12854 94 - 124 1e-11 PPR repeat
PPR PF01535 99 - 129 3.2e-09 PPR repeat
PPR_2 PF13041 100 - 131 1.4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 49, 273, 377
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AseI ATTAAT 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 364
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 78
BciVI GTATCC 1 cut(s) 273
BfaI CTAG 2 cut(s) 227, 399
BfuI GTATCC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 11, 145
Bpu10I CCTNAGC 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 246
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 364
CseI GACGC 1 cut(s) 40
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 6 cut(s) 107, 122, 265, 331, 344, 406
CviJI RGCY 3 cut(s) 181, 216, 245
CviKI_1 RGCY 3 cut(s) 181, 216, 245
DdeI CTNAG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 6 cut(s) 110, 125, 268, 334, 347, 409
FaqI GGGAC 1 cut(s) 377
FatI CATG 6 cut(s) 106, 121, 264, 330, 343, 405
FauNDI CATATG 1 cut(s) 301
FspBI CTAG 2 cut(s) 227, 399
HgaI GACGC 1 cut(s) 40
Hin1II CATG 6 cut(s) 110, 125, 268, 334, 347, 409
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 270, 374
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 4 cut(s) 117, 158, 222, 343
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 6 cut(s) 110, 125, 268, 334, 347, 409
LpnPI CCDG 4 cut(s) 63, 90, 195, 380
LweI GCATC 2 cut(s) 11, 145
MaeI CTAG 2 cut(s) 227, 399
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 190, 260, 401
MboII GAAGA 2 cut(s) 30, 389
MluCI AATT 1 cut(s) 312
MnlI CCTC 1 cut(s) 340
MseI TTAA 2 cut(s) 177, 315
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 78
NdeI CATATG 1 cut(s) 301
NlaIII CATG 6 cut(s) 110, 125, 268, 334, 347, 409
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 190, 260
NspI RCATGY 1 cut(s) 409
PciI ACATGT 1 cut(s) 405
PctI GAATGC 1 cut(s) 306
PscI ACATGT 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 364
SaqAI TTAA 2 cut(s) 177, 315
Sau96I GGNCC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 78
SetI ASST 4 cut(s) 232, 247, 342, 385
SfaNI GCATC 2 cut(s) 11, 145
SinI GGWCC 1 cut(s) 364
Sse9I AATT 1 cut(s) 312
SspI AATATT 1 cut(s) 175
SspMI CTAG 2 cut(s) 227, 399
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 342
TasI AATT 1 cut(s) 312
Tru1I TTAA 2 cut(s) 177, 315
Tru9I TTAA 2 cut(s) 177, 315
TseFI GTSAC 2 cut(s) 190, 260
Tsp45I GTSAC 2 cut(s) 190, 260
TspDTI ATGAA 3 cut(s) 66, 95, 288
VpaK11BI GGWCC 1 cut(s) 364
VspI ATTAAT 1 cut(s) 315
XceI RCATGY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 2 cut(s) 227, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.