RchiOBHm_Chr6g0260361

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
15367966 .. 15369321
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23349

Sequence Viewer

Length: 1311 bp
ATGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACTTGGGTTTTGTATGCTGAGATGTTTAGGTTGAAGATCAAGTCCAGTGCAAATGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTACAATACTATCATTCATGGGTTTTGTTTGAGAGGTAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATGAAAGGGAGAGGAGTTCAGCCGGATTCTTACACGTATGGATTGCTTATTAATGGGATGTGTAAGGAGAGAAGACTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTTGGCTACTTCCGAGTGCTGTTACTTATAACACATTGATTGACCATTATTGCAATAACGGTGATCTAAACAGGGCTTTCGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGCGAAGCTGATTGTATGGTTCAAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTAATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCGTCTATCCTTCGCGATGAAATGTTGAGTAAAGGGATAGAACCCACTAAGGAAACTTATACATCGCTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAAAGAGGCAGATGACTTGTTTGAGAAGATTCTGCGTCAGGGTGTTCTGCCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAGTATGGAGCGTGCATTTTCGCTTTTGAGGGAGATGGATAAAATGAACGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGCAAGGAAAGTTGAGGAAGCTCGAAAACTCCTGGATGAGATGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACGCCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTCGAGGCGAAATGTTGAGTATAGGTTTCAATCCTACACTTCTGACATACAATGCTCTTATAAAGGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCAAGGGCTCCTTAAAGACATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAGAAAGGGCGATTCATTAAGTCTCTCTCGCTGTGTATTGTACTTCCAATTATAG

Protein Analysis

436

Amino Acids

49.62

Weight (kDa)

8.38

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 47 - 79 1.8e-11 PPR repeat
PPR_2 PF13041 50 - 99 4.7e-18 PPR repeat family
PPR PF01535 53 - 83 5.3e-06 PPR repeat
PPR_3 PF13812 74 - 132 2.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 81 - 113 6.6e-12 PPR repeat
PPR PF01535 88 - 115 2.9e-06 PPR repeat
PPR_1 PF12854 119 - 149 1.9e-09 PPR repeat
PPR_2 PF13041 120 - 167 3.3e-16 PPR repeat family
PPR_3 PF13812 120 - 164 4.4e-09 Pentatricopeptide repeat domain
PPR PF01535 123 - 153 6.2e-08 PPR repeat
PPR_2 PF13041 155 - 204 4.8e-16 PPR repeat family
PPR_long PF17177 174 - 238 3e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 180 - 239 1.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 186 - 218 3.5e-12 PPR repeat
PPR_2 PF13041 190 - 238 3.1e-15 PPR repeat family
PPR PF01535 193 - 223 2.5e-08 PPR repeat
PPR_long PF17177 229 - 339 5.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 249 - 305 1.9e-08 Pentatricopeptide repeat domain
TPR_24 PF23276 257 - 354 2.5e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 257 - 288 2e-10 PPR repeat
PPR_2 PF13041 260 - 309 4.2e-17 PPR repeat family
PPR PF01535 263 - 293 2.9e-07 PPR repeat
PPR_1 PF12854 292 - 324 7.6e-12 PPR repeat
PPR_2 PF13041 295 - 336 5e-15 PPR repeat family
PPR PF01535 298 - 328 3.3e-08 PPR repeat
PPR_long PF17177 314 - 410 1.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 318 - 376 5.4e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 326 - 358 4.3e-08 PPR repeat
PPR_2 PF13041 330 - 379 4.8e-15 PPR repeat family
PPR PF01535 333 - 363 1.4e-06 PPR repeat
PPR_1 PF12854 362 - 394 8.1e-07 PPR repeat
PPR_2 PF13041 365 - 411 1.9e-12 PPR repeat family
PPR PF01535 369 - 398 3.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 375, 1121
Acc36I ACCTGC 1 cut(s) 600
AccII CGCG 1 cut(s) 645
AclI AACGTT 1 cut(s) 876
AclWI GGATC 1 cut(s) 789
AcsI RAATTY 2 cut(s) 345, 1250
AfaI GTAC 1 cut(s) 1298
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 6 cut(s) 52, 91, 542, 796, 1057, 1090
AjnI CCWGG 1 cut(s) 957
AluBI AGCT 2 cut(s) 527, 947
AluI AGCT 2 cut(s) 527, 947
Alw26I GTCTC 1 cut(s) 1283
AlwI GGATC 1 cut(s) 789
ApeKI GCWGC 1 cut(s) 921
ApoI RAATTY 2 cut(s) 345, 1250
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AseI ATTAAT 2 cut(s) 282, 597
AspA2I CCTAGG 1 cut(s) 5
AspLEI GCGC 1 cut(s) 921
AsuHPI GGTGA 6 cut(s) 419, 457, 529, 1049, 1160, 1192
AsuII TTCGAA 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 5
BanII GRGCYC 2 cut(s) 214, 1167
BbsI GAAGAC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 908
BccI CCATC 3 cut(s) 436, 803, 856
BciT130I CCWGG 1 cut(s) 959
BcoDI GTCTC 1 cut(s) 1283
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 922
BfoI RGCGCY 1 cut(s) 922
BfuAI ACCTGC 1 cut(s) 600
BisI GCNGC 1 cut(s) 922
BlnI CCTAGG 1 cut(s) 5
BlsI GCNGC 1 cut(s) 923
Bme1390I CCNGG 1 cut(s) 959
BmiI GGNNCC 2 cut(s) 567, 1166
BmrFI CCNGG 1 cut(s) 959
BmsI GCATC 2 cut(s) 562, 1039
BpiI GAAGAC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 1143
BsaAI YACGTR 2 cut(s) 267, 582
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 959
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 3 cut(s) 294, 880, 967
BseMII CTCAG 3 cut(s) 66, 227, 1270
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 908
Bsh1236I CGCG 1 cut(s) 645
BsiSI CCGG 2 cut(s) 254, 779
BsmAI GTCTC 1 cut(s) 1283
BsmI GAATGC 1 cut(s) 625
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 214, 1167
Bsp143I GATC 5 cut(s) 93, 219, 409, 781, 1150
Bsp68I TCGCGA 1 cut(s) 645
BspCNI CTCAG 3 cut(s) 67, 226, 1269
BspFNI CGCG 1 cut(s) 645
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 567, 1166
BspMAI CTGCAG 1 cut(s) 926
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 1 cut(s) 789
BspT104I TTCGAA 1 cut(s) 44
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 5 cut(s) 93, 219, 409, 781, 1150
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 959
Bst4CI ACNGT 3 cut(s) 154, 407, 469
Bst6I CTCTTC 3 cut(s) 546, 716, 965
BstBAI YACGTR 2 cut(s) 267, 582
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 840
BstDEI CTNAG 5 cut(s) 12, 75, 213, 678, 1256
BstF5I GGATG 3 cut(s) 294, 880, 967
BstFNI CGCG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 922
BstHHI GCGC 1 cut(s) 921
BstKTI GATC 5 cut(s) 96, 222, 412, 784, 1153
BstMAI GTCTC 1 cut(s) 1283
BstMBI GATC 5 cut(s) 93, 219, 409, 781, 1150
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 1 cut(s) 959
BstSCI CCNGG 1 cut(s) 957
BstSFI CTRYAG 1 cut(s) 922
BstSNI TACGTA 1 cut(s) 582
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 908
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BtgZI GCGATG 2 cut(s) 660, 678
BtsCI GGATG 3 cut(s) 294, 880, 967
BtsIMutI CAGTG 1 cut(s) 109
BtuMI TCGCGA 1 cut(s) 645
BveI ACCTGC 1 cut(s) 600
Cac8I GCNNGC 1 cut(s) 840
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 921
CseI GACGC 3 cut(s) 306, 621, 752
Csp6I GTAC 1 cut(s) 1297
CviAII CATG 3 cut(s) 179, 494, 1177
CviQI GTAC 1 cut(s) 1297
DdeI CTNAG 5 cut(s) 12, 75, 213, 678, 1256
DpnI GATC 5 cut(s) 95, 221, 411, 783, 1152
DpnII GATC 5 cut(s) 93, 219, 409, 781, 1150
Eam1104I CTCTTC 3 cut(s) 546, 716, 965
EarI CTCTTC 3 cut(s) 546, 716, 965
Eco105I TACGTA 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 2 cut(s) 214, 1167
EcoRII CCWGG 1 cut(s) 957
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 2 cut(s) 214, 1167
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 3 cut(s) 182, 497, 1180
FalI AAGNNNNNCTT 4 cut(s) 1137, 1169, 1152, 1184
FatI CATG 3 cut(s) 178, 493, 1176
Fnu4HI GCNGC 1 cut(s) 922
FokI GGATG 3 cut(s) 301, 867, 974
FriOI GRGCYC 2 cut(s) 214, 1167
Fsp4HI GCNGC 1 cut(s) 922
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 920
GluI GCNGC 1 cut(s) 922
HaeII RGCGCY 1 cut(s) 922
HapII CCGG 2 cut(s) 254, 779
HgaI GACGC 3 cut(s) 306, 621, 752
HhaI GCGC 1 cut(s) 921
Hin1II CATG 3 cut(s) 182, 497, 1180
Hin6I GCGC 1 cut(s) 919
HinP1I GCGC 1 cut(s) 919
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 5 cut(s) 52, 257, 490, 757, 1268
HpaII CCGG 2 cut(s) 254, 779
HphI GGTGA 6 cut(s) 419, 457, 529, 1049, 1160, 1192
Hpy166II GTNNAC 3 cut(s) 474, 1022, 1031
Hpy188I TCNGA 5 cut(s) 216, 360, 1104, 1224, 1259
Hpy188III TCNNGA 6 cut(s) 494, 542, 569, 644, 884, 1199
Hpy8I GTNNAC 3 cut(s) 474, 1022, 1031
Hpy99I CGWCG 1 cut(s) 469
HpyAV CCTTC 7 cut(s) 445, 503, 550, 650, 969, 1063, 1139
HpyCH4III ACNGT 3 cut(s) 154, 407, 469
HpyCH4IV ACGT 3 cut(s) 266, 581, 876
HpyCH4V TGCA 8 cut(s) 107, 399, 609, 623, 842, 913, 924, 1134
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 5 cut(s) 12, 75, 213, 678, 1256
HpySE526I ACGT 3 cut(s) 266, 581, 876
Hsp92II CATG 3 cut(s) 182, 497, 1180
HspAI GCGC 1 cut(s) 919
Kzo9I GATC 5 cut(s) 93, 219, 409, 781, 1150
LmnI GCTCC 2 cut(s) 835, 1170
Lsp1109I GCAGC 1 cut(s) 908
LweI GCATC 2 cut(s) 562, 1039
MaeI CTAG 1 cut(s) 6
MaeII ACGT 3 cut(s) 266, 581, 876
MaeIII GTNAC 4 cut(s) 157, 367, 892, 1001
MalI GATC 5 cut(s) 95, 221, 411, 783, 1152
MboI GATC 5 cut(s) 93, 219, 409, 781, 1150
MboII GAAGA 7 cut(s) 103, 315, 460, 563, 733, 766, 982
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 2 cut(s) 214, 1167
MmeI TCCRAC 1 cut(s) 184
MseI TTAA 6 cut(s) 144, 282, 597, 984, 1170, 1274
MslI CAYNNNNRTG 1 cut(s) 885
MspI CCGG 2 cut(s) 254, 779
MspR9I CCNGG 1 cut(s) 959
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 959
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 5 cut(s) 93, 219, 409, 781, 1150
NlaIII CATG 3 cut(s) 182, 497, 1180
NlaIV GGNNCC 2 cut(s) 567, 1166
NmuCI GTSAC 1 cut(s) 892
NruI TCGCGA 1 cut(s) 645
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 493
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 5 cut(s) 52, 257, 490, 757, 1268
PflFI GACNNNGTC 1 cut(s) 469
PfoI TCCNGGA 1 cut(s) 957
PkrI GCNGC 1 cut(s) 923
Ppu21I YACGTR 2 cut(s) 267, 582
PshBI ATTAAT 2 cut(s) 282, 597
PsiI TTATAA 2 cut(s) 375, 1121
Psp1406I AACGTT 1 cut(s) 876
Psp6I CCWGG 1 cut(s) 957
PspGI CCWGG 1 cut(s) 957
PspN4I GGNNCC 2 cut(s) 567, 1166
PstI CTGCAG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 781
PsyI GACNNNGTC 1 cut(s) 469
RruI TCGCGA 1 cut(s) 645
RsaI GTAC 1 cut(s) 1298
RsaNI GTAC 1 cut(s) 1297
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 6 cut(s) 144, 282, 597, 984, 1170, 1274
SatI GCNGC 1 cut(s) 922
Sau3AI GATC 5 cut(s) 93, 219, 409, 781, 1150
ScrFI CCNGG 1 cut(s) 959
SduI GDGCHC 2 cut(s) 214, 1167
SfaNI GCATC 2 cut(s) 562, 1039
SfcI CTRYAG 1 cut(s) 922
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 1158
SmoI CTYRAG 1 cut(s) 1158
SnaBI TACGTA 1 cut(s) 582
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 957
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 3 cut(s) 154, 407, 469
TaiI ACGT 3 cut(s) 269, 584, 879
TaqI TCGA 4 cut(s) 44, 55, 949, 1063
TatI WGTACW 1 cut(s) 1296
TfiI GAWTC 5 cut(s) 52, 257, 490, 757, 1268
Tru1I TTAA 6 cut(s) 144, 282, 597, 984, 1170, 1274
Tru9I TTAA 6 cut(s) 144, 282, 597, 984, 1170, 1274
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 1 cut(s) 921
Tsp45I GTSAC 1 cut(s) 892
TspRI CASTG 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 469
VspI ATTAAT 2 cut(s) 282, 597
XapI RAATTY 2 cut(s) 345, 1250
XmaJI CCTAGG 1 cut(s) 5
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.