Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 47 - 79 | 1.8e-11 | PPR repeat |
| PPR_2 | PF13041 | 50 - 99 | 4.7e-18 | PPR repeat family |
| PPR | PF01535 | 53 - 83 | 5.3e-06 | PPR repeat |
| PPR_3 | PF13812 | 74 - 132 | 2.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 81 - 113 | 6.6e-12 | PPR repeat |
| PPR | PF01535 | 88 - 115 | 2.9e-06 | PPR repeat |
| PPR_1 | PF12854 | 119 - 149 | 1.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 120 - 167 | 3.3e-16 | PPR repeat family |
| PPR_3 | PF13812 | 120 - 164 | 4.4e-09 | Pentatricopeptide repeat domain |
| PPR | PF01535 | 123 - 153 | 6.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 155 - 204 | 4.8e-16 | PPR repeat family |
| PPR_long | PF17177 | 174 - 238 | 3e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 180 - 239 | 1.2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 186 - 218 | 3.5e-12 | PPR repeat |
| PPR_2 | PF13041 | 190 - 238 | 3.1e-15 | PPR repeat family |
| PPR | PF01535 | 193 - 223 | 2.5e-08 | PPR repeat |
| PPR_long | PF17177 | 229 - 339 | 5.4e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 249 - 305 | 1.9e-08 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 257 - 354 | 2.5e-09 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 257 - 288 | 2e-10 | PPR repeat |
| PPR_2 | PF13041 | 260 - 309 | 4.2e-17 | PPR repeat family |
| PPR | PF01535 | 263 - 293 | 2.9e-07 | PPR repeat |
| PPR_1 | PF12854 | 292 - 324 | 7.6e-12 | PPR repeat |
| PPR_2 | PF13041 | 295 - 336 | 5e-15 | PPR repeat family |
| PPR | PF01535 | 298 - 328 | 3.3e-08 | PPR repeat |
| PPR_long | PF17177 | 314 - 410 | 1.9e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 318 - 376 | 5.4e-14 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 326 - 358 | 4.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 330 - 379 | 4.8e-15 | PPR repeat family |
| PPR | PF01535 | 333 - 363 | 1.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 362 - 394 | 8.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 365 - 411 | 1.9e-12 | PPR repeat family |
| PPR | PF01535 | 369 - 398 | 3.1e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 375, 1121 |
| Acc36I | ACCTGC | 1 cut(s) | 600 |
| AccII | CGCG | 1 cut(s) | 645 |
| AclI | AACGTT | 1 cut(s) | 876 |
| AclWI | GGATC | 1 cut(s) | 789 |
| AcsI | RAATTY | 2 cut(s) | 345, 1250 |
| AfaI | GTAC | 1 cut(s) | 1298 |
| AflIII | ACRYGT | 1 cut(s) | 264 |
| AgsI | TTSAA | 6 cut(s) | 52, 91, 542, 796, 1057, 1090 |
| AjnI | CCWGG | 1 cut(s) | 957 |
| AluBI | AGCT | 2 cut(s) | 527, 947 |
| AluI | AGCT | 2 cut(s) | 527, 947 |
| Alw26I | GTCTC | 1 cut(s) | 1283 |
| AlwI | GGATC | 1 cut(s) | 789 |
| ApeKI | GCWGC | 1 cut(s) | 921 |
| ApoI | RAATTY | 2 cut(s) | 345, 1250 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 617, 649 |
| AseI | ATTAAT | 2 cut(s) | 282, 597 |
| AspA2I | CCTAGG | 1 cut(s) | 5 |
| AspLEI | GCGC | 1 cut(s) | 921 |
| AsuHPI | GGTGA | 6 cut(s) | 419, 457, 529, 1049, 1160, 1192 |
| AsuII | TTCGAA | 1 cut(s) | 44 |
| AvrII | CCTAGG | 1 cut(s) | 5 |
| BanII | GRGCYC | 2 cut(s) | 214, 1167 |
| BbsI | GAAGAC | 1 cut(s) | 310 |
| BbvI | GCAGC | 1 cut(s) | 908 |
| BccI | CCATC | 3 cut(s) | 436, 803, 856 |
| BciT130I | CCWGG | 1 cut(s) | 959 |
| BcoDI | GTCTC | 1 cut(s) | 1283 |
| BfaI | CTAG | 1 cut(s) | 6 |
| BfmI | CTRYAG | 1 cut(s) | 922 |
| BfoI | RGCGCY | 1 cut(s) | 922 |
| BfuAI | ACCTGC | 1 cut(s) | 600 |
| BisI | GCNGC | 1 cut(s) | 922 |
| BlnI | CCTAGG | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 923 |
| Bme1390I | CCNGG | 1 cut(s) | 959 |
| BmiI | GGNNCC | 2 cut(s) | 567, 1166 |
| BmrFI | CCNGG | 1 cut(s) | 959 |
| BmsI | GCATC | 2 cut(s) | 562, 1039 |
| BpiI | GAAGAC | 1 cut(s) | 310 |
| Bpu14I | TTCGAA | 1 cut(s) | 44 |
| BpuEI | CTTGAG | 1 cut(s) | 1143 |
| BsaAI | YACGTR | 2 cut(s) | 267, 582 |
| BsaJI | CCNNGG | 1 cut(s) | 5 |
| Bse1I | ACTGG | 1 cut(s) | 102 |
| BseBI | CCWGG | 1 cut(s) | 959 |
| BseDI | CCNNGG | 1 cut(s) | 5 |
| BseGI | GGATG | 3 cut(s) | 294, 880, 967 |
| BseMII | CTCAG | 3 cut(s) | 66, 227, 1270 |
| BseNI | ACTGG | 1 cut(s) | 102 |
| BseRI | GAGGAG | 1 cut(s) | 258 |
| BseXI | GCAGC | 1 cut(s) | 908 |
| Bsh1236I | CGCG | 1 cut(s) | 645 |
| BsiSI | CCGG | 2 cut(s) | 254, 779 |
| BsmAI | GTCTC | 1 cut(s) | 1283 |
| BsmI | GAATGC | 1 cut(s) | 625 |
| Bsp119I | TTCGAA | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 2 cut(s) | 214, 1167 |
| Bsp143I | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| Bsp68I | TCGCGA | 1 cut(s) | 645 |
| BspCNI | CTCAG | 3 cut(s) | 67, 226, 1269 |
| BspFNI | CGCG | 1 cut(s) | 645 |
| BspHI | TCATGA | 1 cut(s) | 493 |
| BspLI | GGNNCC | 2 cut(s) | 567, 1166 |
| BspMAI | CTGCAG | 1 cut(s) | 926 |
| BspMI | ACCTGC | 1 cut(s) | 600 |
| BspPI | GGATC | 1 cut(s) | 789 |
| BspT104I | TTCGAA | 1 cut(s) | 44 |
| BsrI | ACTGG | 1 cut(s) | 102 |
| BssECI | CCNNGG | 1 cut(s) | 5 |
| BssMI | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| BssT1I | CCWWGG | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 959 |
| Bst4CI | ACNGT | 3 cut(s) | 154, 407, 469 |
| Bst6I | CTCTTC | 3 cut(s) | 546, 716, 965 |
| BstBAI | YACGTR | 2 cut(s) | 267, 582 |
| BstBI | TTCGAA | 1 cut(s) | 44 |
| BstC8I | GCNNGC | 1 cut(s) | 840 |
| BstDEI | CTNAG | 5 cut(s) | 12, 75, 213, 678, 1256 |
| BstF5I | GGATG | 3 cut(s) | 294, 880, 967 |
| BstFNI | CGCG | 1 cut(s) | 645 |
| BstH2I | RGCGCY | 1 cut(s) | 922 |
| BstHHI | GCGC | 1 cut(s) | 921 |
| BstKTI | GATC | 5 cut(s) | 96, 222, 412, 784, 1153 |
| BstMAI | GTCTC | 1 cut(s) | 1283 |
| BstMBI | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 629 |
| BstNI | CCWGG | 1 cut(s) | 959 |
| BstSCI | CCNGG | 1 cut(s) | 957 |
| BstSFI | CTRYAG | 1 cut(s) | 922 |
| BstSNI | TACGTA | 1 cut(s) | 582 |
| BstUI | CGCG | 1 cut(s) | 645 |
| BstV1I | GCAGC | 1 cut(s) | 908 |
| BstV2I | GAAGAC | 1 cut(s) | 310 |
| BstX2I | RGATCY | 1 cut(s) | 781 |
| BstYI | RGATCY | 1 cut(s) | 781 |
| BtgZI | GCGATG | 2 cut(s) | 660, 678 |
| BtsCI | GGATG | 3 cut(s) | 294, 880, 967 |
| BtsIMutI | CAGTG | 1 cut(s) | 109 |
| BtuMI | TCGCGA | 1 cut(s) | 645 |
| BveI | ACCTGC | 1 cut(s) | 600 |
| Cac8I | GCNNGC | 1 cut(s) | 840 |
| CciI | TCATGA | 1 cut(s) | 493 |
| CfoI | GCGC | 1 cut(s) | 921 |
| CseI | GACGC | 3 cut(s) | 306, 621, 752 |
| Csp6I | GTAC | 1 cut(s) | 1297 |
| CviAII | CATG | 3 cut(s) | 179, 494, 1177 |
| CviQI | GTAC | 1 cut(s) | 1297 |
| DdeI | CTNAG | 5 cut(s) | 12, 75, 213, 678, 1256 |
| DpnI | GATC | 5 cut(s) | 95, 221, 411, 783, 1152 |
| DpnII | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| Eam1104I | CTCTTC | 3 cut(s) | 546, 716, 965 |
| EarI | CTCTTC | 3 cut(s) | 546, 716, 965 |
| Eco105I | TACGTA | 1 cut(s) | 582 |
| Eco130I | CCWWGG | 1 cut(s) | 5 |
| Eco24I | GRGCYC | 2 cut(s) | 214, 1167 |
| EcoRII | CCWGG | 1 cut(s) | 957 |
| EcoT14I | CCWWGG | 1 cut(s) | 5 |
| EcoT38I | GRGCYC | 2 cut(s) | 214, 1167 |
| ErhI | CCWWGG | 1 cut(s) | 5 |
| FaeI | CATG | 3 cut(s) | 182, 497, 1180 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1137, 1169, 1152, 1184 |
| FatI | CATG | 3 cut(s) | 178, 493, 1176 |
| Fnu4HI | GCNGC | 1 cut(s) | 922 |
| FokI | GGATG | 3 cut(s) | 301, 867, 974 |
| FriOI | GRGCYC | 2 cut(s) | 214, 1167 |
| Fsp4HI | GCNGC | 1 cut(s) | 922 |
| FspBI | CTAG | 1 cut(s) | 6 |
| GlaI | GCGC | 1 cut(s) | 920 |
| GluI | GCNGC | 1 cut(s) | 922 |
| HaeII | RGCGCY | 1 cut(s) | 922 |
| HapII | CCGG | 2 cut(s) | 254, 779 |
| HgaI | GACGC | 3 cut(s) | 306, 621, 752 |
| HhaI | GCGC | 1 cut(s) | 921 |
| Hin1II | CATG | 3 cut(s) | 182, 497, 1180 |
| Hin6I | GCGC | 1 cut(s) | 919 |
| HinP1I | GCGC | 1 cut(s) | 919 |
| HincII | GTYRAC | 1 cut(s) | 474 |
| HindII | GTYRAC | 1 cut(s) | 474 |
| HinfI | GANTC | 5 cut(s) | 52, 257, 490, 757, 1268 |
| HpaII | CCGG | 2 cut(s) | 254, 779 |
| HphI | GGTGA | 6 cut(s) | 419, 457, 529, 1049, 1160, 1192 |
| Hpy166II | GTNNAC | 3 cut(s) | 474, 1022, 1031 |
| Hpy188I | TCNGA | 5 cut(s) | 216, 360, 1104, 1224, 1259 |
| Hpy188III | TCNNGA | 6 cut(s) | 494, 542, 569, 644, 884, 1199 |
| Hpy8I | GTNNAC | 3 cut(s) | 474, 1022, 1031 |
| Hpy99I | CGWCG | 1 cut(s) | 469 |
| HpyAV | CCTTC | 7 cut(s) | 445, 503, 550, 650, 969, 1063, 1139 |
| HpyCH4III | ACNGT | 3 cut(s) | 154, 407, 469 |
| HpyCH4IV | ACGT | 3 cut(s) | 266, 581, 876 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 399, 609, 623, 842, 913, 924, 1134 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 629 |
| HpyF3I | CTNAG | 5 cut(s) | 12, 75, 213, 678, 1256 |
| HpySE526I | ACGT | 3 cut(s) | 266, 581, 876 |
| Hsp92II | CATG | 3 cut(s) | 182, 497, 1180 |
| HspAI | GCGC | 1 cut(s) | 919 |
| Kzo9I | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| LmnI | GCTCC | 2 cut(s) | 835, 1170 |
| Lsp1109I | GCAGC | 1 cut(s) | 908 |
| LweI | GCATC | 2 cut(s) | 562, 1039 |
| MaeI | CTAG | 1 cut(s) | 6 |
| MaeII | ACGT | 3 cut(s) | 266, 581, 876 |
| MaeIII | GTNAC | 4 cut(s) | 157, 367, 892, 1001 |
| MalI | GATC | 5 cut(s) | 95, 221, 411, 783, 1152 |
| MboI | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| MboII | GAAGA | 7 cut(s) | 103, 315, 460, 563, 733, 766, 982 |
| MflI | RGATCY | 1 cut(s) | 781 |
| MhlI | GDGCHC | 2 cut(s) | 214, 1167 |
| MmeI | TCCRAC | 1 cut(s) | 184 |
| MseI | TTAA | 6 cut(s) | 144, 282, 597, 984, 1170, 1274 |
| MslI | CAYNNNNRTG | 1 cut(s) | 885 |
| MspI | CCGG | 2 cut(s) | 254, 779 |
| MspR9I | CCNGG | 1 cut(s) | 959 |
| Mva1269I | GAATGC | 1 cut(s) | 625 |
| MvaI | CCWGG | 1 cut(s) | 959 |
| MvnI | CGCG | 1 cut(s) | 645 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 629 |
| NdeII | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| NlaIII | CATG | 3 cut(s) | 182, 497, 1180 |
| NlaIV | GGNNCC | 2 cut(s) | 567, 1166 |
| NmuCI | GTSAC | 1 cut(s) | 892 |
| NruI | TCGCGA | 1 cut(s) | 645 |
| NspV | TTCGAA | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 493 |
| PctI | GAATGC | 1 cut(s) | 625 |
| PfeI | GAWTC | 5 cut(s) | 52, 257, 490, 757, 1268 |
| PflFI | GACNNNGTC | 1 cut(s) | 469 |
| PfoI | TCCNGGA | 1 cut(s) | 957 |
| PkrI | GCNGC | 1 cut(s) | 923 |
| Ppu21I | YACGTR | 2 cut(s) | 267, 582 |
| PshBI | ATTAAT | 2 cut(s) | 282, 597 |
| PsiI | TTATAA | 2 cut(s) | 375, 1121 |
| Psp1406I | AACGTT | 1 cut(s) | 876 |
| Psp6I | CCWGG | 1 cut(s) | 957 |
| PspGI | CCWGG | 1 cut(s) | 957 |
| PspN4I | GGNNCC | 2 cut(s) | 567, 1166 |
| PstI | CTGCAG | 1 cut(s) | 926 |
| PsuI | RGATCY | 1 cut(s) | 781 |
| PsyI | GACNNNGTC | 1 cut(s) | 469 |
| RruI | TCGCGA | 1 cut(s) | 645 |
| RsaI | GTAC | 1 cut(s) | 1298 |
| RsaNI | GTAC | 1 cut(s) | 1297 |
| RseI | CAYNNNNRTG | 1 cut(s) | 885 |
| SaqAI | TTAA | 6 cut(s) | 144, 282, 597, 984, 1170, 1274 |
| SatI | GCNGC | 1 cut(s) | 922 |
| Sau3AI | GATC | 5 cut(s) | 93, 219, 409, 781, 1150 |
| ScrFI | CCNGG | 1 cut(s) | 959 |
| SduI | GDGCHC | 2 cut(s) | 214, 1167 |
| SfaNI | GCATC | 2 cut(s) | 562, 1039 |
| SfcI | CTRYAG | 1 cut(s) | 922 |
| SfuI | TTCGAA | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 885 |
| SmlI | CTYRAG | 1 cut(s) | 1158 |
| SmoI | CTYRAG | 1 cut(s) | 1158 |
| SnaBI | TACGTA | 1 cut(s) | 582 |
| SspMI | CTAG | 1 cut(s) | 6 |
| StyD4I | CCNGG | 1 cut(s) | 957 |
| StyI | CCWWGG | 1 cut(s) | 5 |
| TaaI | ACNGT | 3 cut(s) | 154, 407, 469 |
| TaiI | ACGT | 3 cut(s) | 269, 584, 879 |
| TaqI | TCGA | 4 cut(s) | 44, 55, 949, 1063 |
| TatI | WGTACW | 1 cut(s) | 1296 |
| TfiI | GAWTC | 5 cut(s) | 52, 257, 490, 757, 1268 |
| Tru1I | TTAA | 6 cut(s) | 144, 282, 597, 984, 1170, 1274 |
| Tru9I | TTAA | 6 cut(s) | 144, 282, 597, 984, 1170, 1274 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 1 cut(s) | 892 |
| TseI | GCWGC | 1 cut(s) | 921 |
| Tsp45I | GTSAC | 1 cut(s) | 892 |
| TspRI | CASTG | 1 cut(s) | 109 |
| Tth111I | GACNNNGTC | 1 cut(s) | 469 |
| VspI | ATTAAT | 2 cut(s) | 282, 597 |
| XapI | RAATTY | 2 cut(s) | 345, 1250 |
| XmaJI | CCTAGG | 1 cut(s) | 5 |
| XspI | CTAG | 1 cut(s) | 6 |