Rh5CG249600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000571
Physical Location & Seq
Forward (+)
26273817 .. 26320047
46231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG249600.1

Sequence Viewer

Length: 1176 bp
ATGGGTTCTGTGATTAGAGGGAGATCGAGATGCGGCGGCGACTGGATGGAGATCGAGGATGCGTTCTGTGAGAGGGAGATCGGGTTCTGTGAGAGAGAGATCGATGCGTTCTGTGAGAGGGAGAGGGAGATCGGGTTCTGTGAGAGGGAGATGAACACAAGCTTGGCATATCCTTTTTTGCCCAGTCGAATCAGAGATGGATTTGGGGACCGAAACCAATTCGGAGATGGTATTGAGGACGGAGTCGCAACCATATTCTTGCCCAAAAGAATTTCACAGCCTGCAATTGAGATTTCTGTACACAAATTGGTGAGTTCGAACAAGGCAATAGTGCAGTGTTCACTTTGGGTTGCCAGCGAATTGAAAGCAAGGCTGTTGGCTTTGACTCCAGGTGCTGTAAGGAAGCCATACATAGACTATTGCTTACATCGAGAACTGTGGGTTGCAGGTTTCTGTTTGGGATTTCACTCTCTGATAGGCCTGTGTGGCAACAATTCATTATTTGCTCTTCTGGGTTGTTCTTTGGTTACCTTGTCAATTGCGTCTGTGAGAAGGCTTCTCAAAGGCCCAAACTTTCTTGGAGGCCCAAAACTGATAAAGGTCACCCAGCTGCATTCCTCACGCGTGCCTTGTTTCAATTTCCACTGCCCCAGAACCACAGTGAACACAAGCTTGGCATATCCTTTTTTGCCCAGTCGAATCAGAGATGGATTTGGGGACCGAAACCAATTCGGAGATGGTATTGAGGACGGAGTCGCAACCATATTCTTGCCCAAAAGAATTTCACAGCCTGCAATTGAGATTTCTGTACACAAATTGGGTGAGGATTTCACTCTTAATTCACTCCTTTGTTTGATTTGTGTGCAACAAAAACTGGACCTTTCTTCTTGGTCTTCTTCATCGGCGACTCTGGGCTTTGCATGTTGTTTTCTGGCGCTGAAATTTAACCGCAGTGAGTTCGAACAAGGCAATAGTGCAGTGTTCACTTTGGGTTGCCAGCGAATTGAAAGCAAGGCTGTTGGCTTTGACTCCAGGTGCGTGTGTGAGTCAGAGAGATTCTTTGCTTCTACCGACAAGCTTCAATCAATTTTCTTTCATTTTCTTATGTTTCCTCCTTCCGCAGGTGCTGTAAGGAAGCCATACATAGACTATTGCTTACATCGAGAGGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

391

Amino Acids

43.64

Weight (kDa)

7.79

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1112
Acc36I ACCTGC 2 cut(s) 437, 1112
AccII CGCG 1 cut(s) 624
AciI CCGC 4 cut(s) 33, 36, 949, 1119
AcsI RAATTY 3 cut(s) 270, 780, 941
AfaI GTAC 2 cut(s) 300, 810
AfiI CCNNNNNNNGG 1 cut(s) 1121
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 4 cut(s) 364, 637, 1007, 1082
AjnI CCWGG 2 cut(s) 388, 1031
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 656, 688
AloI GAACNNNNNNTCC 4 cut(s) 68, 100, 119, 151
AluBI AGCT 4 cut(s) 162, 610, 672, 1078
AluI AGCT 4 cut(s) 162, 610, 672, 1078
AlwNI CAGNNNCTG 2 cut(s) 395, 1127
AoxI GGCC 3 cut(s) 478, 565, 583
ApeKI GCWGC 1 cut(s) 610
ApoI RAATTY 3 cut(s) 270, 780, 941
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 5 cut(s) 208, 566, 584, 718, 877
AsuHPI GGTGA 3 cut(s) 322, 595, 833
AsuII TTCGAA 2 cut(s) 317, 960
AvaII GGWCC 3 cut(s) 208, 718, 877
BbsI GAAGAC 1 cut(s) 885
BbvI GCAGC 1 cut(s) 597
BccI CCATC 5 cut(s) 40, 191, 221, 701, 731
BcgI CGANNNNNNTGC 2 cut(s) 940, 974
BciT130I CCWGG 2 cut(s) 390, 1033
BfoI RGCGCY 1 cut(s) 938
BfuAI ACCTGC 2 cut(s) 437, 1112
BglI GCCNNNNNGGC 1 cut(s) 486
BisI GCNGC 3 cut(s) 34, 37, 611
BlsI GCNGC 3 cut(s) 35, 38, 612
Bme1390I CCNGG 2 cut(s) 390, 1033
Bme18I GGWCC 3 cut(s) 208, 718, 877
BmgT120I GGNCC 5 cut(s) 208, 566, 584, 718, 877
BmiI GGNNCC 2 cut(s) 209, 719
BmrFI CCNGG 2 cut(s) 390, 1033
BmrI ACTGGG 2 cut(s) 177, 687
BmsI GCATC 3 cut(s) 20, 49, 94
BmuI ACTGGG 2 cut(s) 177, 687
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 2 cut(s) 372, 1015
Bpu14I TTCGAA 2 cut(s) 317, 960
Bsa29I ATCGAT 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 4 cut(s) 47, 183, 693, 879
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 2 cut(s) 390, 1033
BseCI ATCGAT 1 cut(s) 102
BseGI GGATG 2 cut(s) 51, 64
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseNI ACTGG 4 cut(s) 47, 183, 693, 879
BseXI GCAGC 1 cut(s) 597
BseYI CCCAGC 1 cut(s) 606
BsgI GTGCAG 2 cut(s) 353, 996
Bsh1236I CGCG 1 cut(s) 624
BshFI GGCC 3 cut(s) 480, 567, 585
BshVI ATCGAT 1 cut(s) 102
BslFI GGGAC 2 cut(s) 221, 731
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmFI GGGAC 2 cut(s) 221, 731
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 3 cut(s) 480, 567, 585
Bsp119I TTCGAA 2 cut(s) 317, 960
Bsp1407I TGTACA 2 cut(s) 298, 808
Bsp143I GATC 5 cut(s) 23, 51, 78, 99, 129
BspACI CCGC 4 cut(s) 33, 36, 949, 1119
BspANI GGCC 3 cut(s) 480, 567, 585
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 624
BspLI GGNNCC 2 cut(s) 209, 719
BspMI ACCTGC 2 cut(s) 437, 1112
BspQI GCTCTTC 1 cut(s) 513
BspT104I TTCGAA 2 cut(s) 317, 960
BsrGI TGTACA 2 cut(s) 298, 808
BsrI ACTGG 4 cut(s) 47, 183, 693, 879
BssMI GATC 5 cut(s) 23, 51, 78, 99, 129
Bst2UI CCWGG 2 cut(s) 390, 1033
Bst4CI ACNGT 2 cut(s) 438, 661
Bst6I CTCTTC 1 cut(s) 513
BstAUI TGTACA 2 cut(s) 298, 808
BstBI TTCGAA 2 cut(s) 317, 960
BstC8I GCNNGC 5 cut(s) 282, 355, 626, 792, 998
BstEII GGTNACC 2 cut(s) 526, 601
BstENI CCTNNNNNAGG 1 cut(s) 1119
BstF5I GGATG 2 cut(s) 51, 64
BstFNI CGCG 1 cut(s) 624
BstH2I RGCGCY 1 cut(s) 938
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 5 cut(s) 26, 54, 81, 102, 132
BstMBI GATC 5 cut(s) 23, 51, 78, 99, 129
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 2 cut(s) 390, 1033
BstNSI RCATGY 1 cut(s) 924
BstPI GGTNACC 2 cut(s) 526, 601
BstSCI CCNGG 2 cut(s) 388, 1031
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 597
BstV2I GAAGAC 1 cut(s) 885
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 3 cut(s) 480, 567, 585
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 2 cut(s) 51, 64
BtsI GCAGTG 4 cut(s) 341, 643, 958, 984
BtsIMutI CAGTG 5 cut(s) 341, 643, 666, 958, 984
BveI ACCTGC 2 cut(s) 437, 1112
Cac8I GCNNGC 5 cut(s) 282, 355, 626, 792, 998
CaiI CAGNNNCTG 2 cut(s) 395, 1127
CfoI GCGC 1 cut(s) 937
Cfr13I GGNCC 5 cut(s) 208, 566, 584, 718, 877
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 531
Csp6I GTAC 2 cut(s) 299, 809
CviAII CATG 1 cut(s) 921
CviQI GTAC 2 cut(s) 299, 809
DpnI GATC 5 cut(s) 25, 53, 80, 101, 131
DpnII GATC 5 cut(s) 23, 51, 78, 99, 129
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 480
Eco47I GGWCC 3 cut(s) 208, 718, 877
Eco91I GGTNACC 2 cut(s) 526, 601
EcoNI CCTNNNNNAGG 1 cut(s) 1119
EcoO65I GGTNACC 2 cut(s) 526, 601
EcoRII CCWGG 2 cut(s) 388, 1031
FaeI CATG 1 cut(s) 924
FaqI GGGAC 2 cut(s) 221, 731
FatI CATG 1 cut(s) 920
Fnu4HI GCNGC 3 cut(s) 34, 37, 611
FokI GGATG 2 cut(s) 58, 71
Fsp4HI GCNGC 3 cut(s) 34, 37, 611
GlaI GCGC 1 cut(s) 936
GluI GCNGC 3 cut(s) 34, 37, 611
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 2 cut(s) 372, 1015
HaeII RGCGCY 1 cut(s) 938
HaeIII GGCC 3 cut(s) 480, 567, 585
HgaI GACGC 1 cut(s) 531
HhaI GCGC 1 cut(s) 937
Hin1II CATG 1 cut(s) 924
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HindIII AAGCTT 3 cut(s) 160, 670, 1076
HinfI GANTC 9 cut(s) 189, 243, 385, 699, 753, 907, 1028, 1046, 1056
HphI GGTGA 3 cut(s) 322, 595, 833
Hpy166II GTNNAC 5 cut(s) 301, 341, 664, 811, 984
Hpy188I TCNGA 6 cut(s) 194, 224, 474, 704, 734, 1051
Hpy188III TCNNGA 3 cut(s) 27, 431, 1163
Hpy8I GTNNAC 5 cut(s) 301, 341, 664, 811, 984
HpyAV CCTTC 2 cut(s) 546, 1125
HpyCH4III ACNGT 2 cut(s) 438, 661
HpyCH4V TGCA 8 cut(s) 284, 334, 446, 613, 794, 865, 920, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
Hsp92II CATG 1 cut(s) 924
HspAI GCGC 1 cut(s) 935
Kzo9I GATC 5 cut(s) 23, 51, 78, 99, 129
LguI GCTCTTC 1 cut(s) 513
Lsp1109I GCAGC 1 cut(s) 597
LweI GCATC 3 cut(s) 20, 49, 94
MaeIII GTNAC 2 cut(s) 526, 601
MalI GATC 5 cut(s) 25, 53, 80, 101, 131
MboI GATC 5 cut(s) 23, 51, 78, 99, 129
MboII GAAGA 4 cut(s) 500, 876, 885, 888
MfeI CAATTG 3 cut(s) 285, 537, 795
MluI ACGCGT 1 cut(s) 622
MlyI GAGTC 6 cut(s) 252, 379, 762, 901, 1022, 1055
MseI TTAA 2 cut(s) 837, 945
MspA1I CMGCKG 1 cut(s) 610
MspR9I CCNGG 2 cut(s) 390, 1033
MunI CAATTG 3 cut(s) 285, 537, 795
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 2 cut(s) 390, 1033
MvnI CGCG 1 cut(s) 624
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeII GATC 5 cut(s) 23, 51, 78, 99, 129
NlaIII CATG 1 cut(s) 924
NlaIV GGNNCC 2 cut(s) 209, 719
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 924
NspV TTCGAA 2 cut(s) 317, 960
PaqCI CACCTGC 1 cut(s) 1112
PceI AGGCCT 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 3 cut(s) 189, 699, 1056
PflFI GACNNNGTC 2 cut(s) 242, 752
PkrI GCNGC 3 cut(s) 35, 38, 612
PleI GAGTC 6 cut(s) 251, 379, 761, 901, 1022, 1054
PpsI GAGTC 6 cut(s) 251, 379, 761, 901, 1022, 1054
Psp6I CCWGG 2 cut(s) 388, 1031
PspEI GGTNACC 2 cut(s) 526, 601
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 2 cut(s) 388, 1031
PspN4I GGNNCC 2 cut(s) 209, 719
PspPI GGNCC 5 cut(s) 208, 566, 584, 718, 877
PstNI CAGNNNCTG 2 cut(s) 395, 1127
PsyI GACNNNGTC 2 cut(s) 242, 752
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 2 cut(s) 300, 810
RsaNI GTAC 2 cut(s) 299, 809
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 837, 945
SatI GCNGC 3 cut(s) 34, 37, 611
Sau3AI GATC 5 cut(s) 23, 51, 78, 99, 129
Sau96I GGNCC 5 cut(s) 208, 566, 584, 718, 877
SchI GAGTC 6 cut(s) 252, 379, 762, 901, 1022, 1055
ScrFI CCNGG 2 cut(s) 390, 1033
SfaNI GCATC 3 cut(s) 20, 49, 94
SfuI TTCGAA 2 cut(s) 317, 960
SinI GGWCC 3 cut(s) 208, 718, 877
SseBI AGGCCT 1 cut(s) 480
SsiI CCGC 4 cut(s) 33, 36, 949, 1119
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 388, 1031
TaaI ACNGT 2 cut(s) 438, 661
TaqI TCGA 9 cut(s) 26, 54, 102, 187, 317, 430, 697, 960, 1162
TaqII GACCGA 2 cut(s) 225, 735
TatI WGTACW 2 cut(s) 298, 808
TauI GCSGC 2 cut(s) 36, 39
TfiI GAWTC 3 cut(s) 189, 699, 1056
Tru1I TTAA 2 cut(s) 837, 945
Tru9I TTAA 2 cut(s) 837, 945
TscAI CASTG 5 cut(s) 341, 650, 666, 958, 984
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 1 cut(s) 610
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 4 cut(s) 167, 486, 888, 1085
TspGWI ACGGA 2 cut(s) 255, 765
TspRI CASTG 5 cut(s) 341, 650, 666, 958, 984
Tth111I GACNNNGTC 2 cut(s) 242, 752
VpaK11BI GGWCC 3 cut(s) 208, 718, 877
XagI CCTNNNNNAGG 1 cut(s) 1119
XapI RAATTY 3 cut(s) 270, 780, 941
XceI RCATGY 1 cut(s) 924
XcmI CCANNNNNNNNNTGG 2 cut(s) 224, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.