Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

11382519 .. 11383486

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG102400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCTCGCCGTCGCCATTCTCGCCGCCCTGCCTTCCCCAAAATCCTCCCTGGAGCTCCTGAAGCAACTCGTCGGCAGCGGCATTGCTCCGATTCGAGACGTTTTCGACTCGCTGGCTCGTGCCCGAGTGCGTTTGGGTGCCCAAAGCGGCGTTGTTTTGGACTTGCTGAAGGCAAGTTAAAGAAGGCAAAGGAGTTTCTTGGGTTTTTGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACTATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATGAAAGGGAGAGGAGTTCAGCCGGATTCTTACACGTATGGATTGCTCATTAGTGGAATGTGTAAGGAGAGAAGACTTGATGAAGCGTCTGGCCTTTTTGATAAAATGCTGGAAATTGGGCTGCTTCCGAGTGCTGTTACTTATAACACCCTGATTGATGGTTATTGCAATAAGGGTGATCTGGACGCCGCTTTCGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACGTACAATTTGTTGATTCATGGATTGTTTATGGAAGGTAGGGTGAGTGAAGCTGATTGTATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTCGGCTCAGGTACCTATCGCATTCAATAGTATTGTTGAACTTGATTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

245

Amino Acids

27.2

Weight (kDa)

9.21

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	74 - 106	8.1e-12	PPR repeat
PPR_2	PF13041	77 - 126	5.6e-18	PPR repeat family
PPR	PF01535	80 - 110	2.4e-06	PPR repeat
PPR_long	PF17177	100 - 191	4.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	101 - 160	5.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	108 - 140	6.3e-12	PPR repeat
PPR	PF01535	115 - 145	2.4e-07	PPR repeat
PPR_2	PF13041	120 - 152	1.5e-06	PPR repeat family
PPR_3	PF13812	136 - 191	4.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	144 - 176	3.3e-12	PPR repeat
PPR_2	PF13041	147 - 194	4.9e-18	PPR repeat family
PPR	PF01535	150 - 180	1.1e-09	PPR repeat
PPR_3	PF13812	173 - 227	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	178 - 211	8.2e-08	PPR repeat
PPR_2	PF13041	182 - 229	2.4e-15	PPR repeat family
PPR	PF01535	185 - 215	5.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	246, 456
Acc65I	GGTACC	1 cut(s)	694
AccB1I	GGYRCC	2 cut(s)	138, 694
AciI	CCGC	4 cut(s)	25, 79, 148, 501
AcuI	CTGAAG	2 cut(s)	81, 189
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	2 cut(s)	560, 696
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	709, 722
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	56, 608
AluI	AGCT	2 cut(s)	56, 608
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	76, 433
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AseI	ATTAAT	1 cut(s)	678
Asp718I	GGTACC	1 cut(s)	694
AsuHPI	GGTGA	3 cut(s)	500, 538, 610
AvaI	CYCGRG	1 cut(s)	124
BaeGI	GKGCMC	2 cut(s)	125, 143
BanI	GGYRCC	2 cut(s)	138, 694
BanII	GRGCYC	2 cut(s)	58, 295
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	88, 420
BccI	CCATC	2 cut(s)	464, 517
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	91
BisI	GCNGC	6 cut(s)	25, 77, 80, 149, 434, 501
BlsI	GCNGC	6 cut(s)	26, 78, 81, 150, 435, 502
Bme1390I	CCNGG	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	124
BmiI	GGNNCC	3 cut(s)	140, 648, 696
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	690
BsaAI	YACGTR	2 cut(s)	348, 663
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	308, 704
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	2 cut(s)	125, 143
BseXI	GCAGC	2 cut(s)	88, 420
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	2 cut(s)	138, 694
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	4 cut(s)	58, 125, 143, 295
Bsp143I	GATC	2 cut(s)	300, 490
BspACI	CCGC	4 cut(s)	25, 79, 148, 501
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	307, 703
BspLI	GGNNCC	3 cut(s)	140, 648, 696
BspT107I	GGYRCC	2 cut(s)	138, 694
BsrDI	GCAATG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	300, 490
BssNI	GRCGYC	1 cut(s)	498
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	235, 550
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	498
BstBAI	YACGTR	2 cut(s)	348, 663
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	294, 690
BstKTI	GATC	2 cut(s)	303, 493
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	300, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 62
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	2 cut(s)	125, 143
BstSNI	TACGTA	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	88, 420
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	115
CseI	GACGC	2 cut(s)	387, 506
Csp6I	GTAC	2 cut(s)	559, 695
CviAII	CATG	2 cut(s)	260, 575
CviQI	GTAC	2 cut(s)	559, 695
DdeI	CTNAG	2 cut(s)	294, 690
DpnI	GATC	2 cut(s)	302, 492
DpnII	GATC	2 cut(s)	300, 490
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	56
Eco105I	TACGTA	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	58, 295
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	81, 189
Eco88I	CYCGRG	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	2 cut(s)	58, 295
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	263, 578
FatI	CATG	2 cut(s)	259, 574
Fnu4HI	GCNGC	6 cut(s)	25, 77, 80, 149, 434, 501
FriOI	GRGCYC	2 cut(s)	58, 295
Fsp4HI	GCNGC	6 cut(s)	25, 77, 80, 149, 434, 501
GluI	GCNGC	6 cut(s)	25, 77, 80, 149, 434, 501
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	2 cut(s)	387, 506
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	263, 578
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HinfI	GANTC	5 cut(s)	92, 108, 338, 571, 728
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	500, 538, 610
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	4 cut(s)	91, 297, 441, 733
Hpy188III	TCNNGA	5 cut(s)	59, 96, 494, 650, 673
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	3 cut(s)	15, 75, 550
HpyAV	CCTTC	6 cut(s)	43, 164, 178, 526, 584, 631
HpyCH4III	ACNGT	2 cut(s)	235, 550
HpyCH4IV	ACGT	4 cut(s)	100, 347, 557, 662
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 62
HpyF3I	CTNAG	2 cut(s)	294, 690
HpySE526I	ACGT	4 cut(s)	100, 347, 557, 662
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	263, 578
KpnI	GGTACC	1 cut(s)	698
Kzo9I	GATC	2 cut(s)	300, 490
LmnI	GCTCC	3 cut(s)	53, 61, 92
Lsp1109I	GCAGC	2 cut(s)	88, 420
LweI	GCATC	1 cut(s)	643
MaeII	ACGT	4 cut(s)	100, 347, 557, 662
MaeIII	GTNAC	2 cut(s)	238, 448
MalI	GATC	2 cut(s)	302, 492
MboI	GATC	2 cut(s)	300, 490
MboII	GAAGA	3 cut(s)	396, 541, 644
MhlI	GDGCHC	4 cut(s)	58, 125, 143, 295
MluCI	AATT	2 cut(s)	426, 562
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	15, 56, 269, 281, 317
MseI	TTAA	3 cut(s)	179, 225, 678
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	21, 62
NdeII	GATC	2 cut(s)	300, 490
NlaIII	CATG	2 cut(s)	263, 578
NlaIV	GGNNCC	3 cut(s)	140, 648, 696
NmeAIII	GCCGAG	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	4 cut(s)	92, 338, 571, 728
PflFI	GACNNNGTC	1 cut(s)	550
PkrI	GCNGC	6 cut(s)	26, 78, 81, 150, 435, 502
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Ppu21I	YACGTR	2 cut(s)	348, 663
PshBI	ATTAAT	1 cut(s)	678
PsiI	TTATAA	2 cut(s)	246, 456
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	140, 648, 696
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	2 cut(s)	560, 696
RsaNI	GTAC	2 cut(s)	559, 695
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	179, 225, 678
SatI	GCNGC	6 cut(s)	25, 77, 80, 149, 434, 501
Sau3AI	GATC	2 cut(s)	300, 490
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	4 cut(s)	58, 125, 143, 295
SetI	ASST	9 cut(s)	58, 103, 350, 560, 595, 610, 665, 696, 700
SfaNI	GCATC	1 cut(s)	643
SnaBI	TACGTA	1 cut(s)	663
Sse9I	AATT	2 cut(s)	426, 562
SsiI	CCGC	4 cut(s)	25, 79, 148, 501
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	235, 550
TaiI	ACGT	4 cut(s)	103, 350, 560, 665
TaqI	TCGA	2 cut(s)	95, 106
TasI	AATT	2 cut(s)	426, 562
TauI	GCSGC	4 cut(s)	27, 82, 151, 503
TfiI	GAWTC	4 cut(s)	92, 338, 571, 728
Tru1I	TTAA	3 cut(s)	179, 225, 678
Tru9I	TTAA	3 cut(s)	179, 225, 678
TseI	GCWGC	2 cut(s)	76, 433
TspDTI	ATGAA	4 cut(s)	248, 329, 408, 563
Tth111I	GACNNNGTC	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.