Rh2CG188200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000571
Physical Location & Seq
Forward (+)
17564360 .. 17566085
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG188200.1

Sequence Viewer

Length: 522 bp
ATGGACAGCCATAAACTTCTCAGAAGCCCAAAGCGTCTCACAGGCCTAGTTGCTATCTTTTTTCACTTATTCTTTTATTTTTCTTTTCTCACAGCTGCTTTTTACTTCAATCTCCATCATCCCCAAACCCAGGTGAACACGGACTTGGTGCGTCATTCTTGCCAAGCCAAAGCGGAGATGGATTTGGAGACAGAAATCCATTTGGCGATGGAGTTAAAGATGGGGCCACGACCATATTCTTGTCCCAAAAGGATTTCAGAGCCTGCAATTGAGATTTCTGCACACAAATTGGTGACTCTGGGCTTTGAATTTTGTCTTCTGGTGTTGAAATTTAACCGCGGTGAGTTCGAACAAGGCAATAGTGCAGCTTTTACTTTGGGTTGCCAGCGAATTGAAAGCAAGGCTCTTGGCTTTGACTCCAGGTGCTATAAGGAAGCCATACATAGACTATTGCTGACATCGAGAGTACAAAACAAGTACAAGAGCTGTGGTGTCATAAATTTCAGAGTTCCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.92

Weight (kDa)

9.08

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 173, 337, 339
AcsI RAATTY 3 cut(s) 308, 329, 499
AfaI GTAC 2 cut(s) 468, 479
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 109, 308, 328, 395
AjnI CCWGG 2 cut(s) 129, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 3 cut(s) 95, 368, 486
AluI AGCT 3 cut(s) 95, 368, 486
Alw26I GTCTC 2 cut(s) 41, 182
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 2 cut(s) 43, 224
ApeKI GCWGC 2 cut(s) 95, 365
ApoI RAATTY 3 cut(s) 308, 329, 499
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 145, 304, 353
AsuII TTCGAA 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 82, 377
BccI CCATC 4 cut(s) 123, 172, 202, 214
BciT130I CCWGG 2 cut(s) 131, 421
BcoDI GTCTC 2 cut(s) 41, 182
BfaI CTAG 1 cut(s) 47
BisI GCNGC 2 cut(s) 96, 366
BlsI GCNGC 2 cut(s) 97, 367
Bme1390I CCNGG 2 cut(s) 131, 421
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 2 cut(s) 131, 421
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 403
Bpu14I TTCGAA 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 129, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseBI CCWGG 2 cut(s) 131, 421
BseDI CCNNGG 2 cut(s) 129, 337
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 34
BseXI GCAGC 2 cut(s) 82, 377
BsgI GTGCAG 2 cut(s) 264, 384
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 45, 226
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 41, 182
BsmBI CGTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 2 cut(s) 45, 226
Bsp119I TTCGAA 1 cut(s) 348
BspACI CCGC 3 cut(s) 173, 337, 339
BspANI GGCC 2 cut(s) 45, 226
BspCNI CTCAG 1 cut(s) 33
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 129, 337
Bst2UI CCWGG 2 cut(s) 131, 421
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 264, 386
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 339
BstMAI GTCTC 2 cut(s) 41, 182
BstNI CCWGG 2 cut(s) 131, 421
BstSCI CCNGG 2 cut(s) 129, 419
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 82, 377
BstV2I GAAGAC 1 cut(s) 308
BsuRI GGCC 2 cut(s) 45, 226
BtgI CCRYGG 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 264, 386
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 224
Cfr42I CCGCGG 1 cut(s) 340
CseI GACGC 2 cut(s) 23, 140
Csp6I GTAC 2 cut(s) 467, 478
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviQI GTAC 2 cut(s) 467, 478
DdeI CTNAG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 129, 419
Esp3I CGTCTC 1 cut(s) 41
FaiI YATR 6 cut(s) 12, 235, 429, 440, 444, 497
FaqI GGGAC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 96, 366
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 96, 366
FspBI CTAG 1 cut(s) 47
GluI GCNGC 2 cut(s) 96, 366
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 2 cut(s) 45, 226
HgaI GACGC 2 cut(s) 23, 140
HinfI GANTC 2 cut(s) 295, 416
HphI GGTGA 3 cut(s) 145, 304, 353
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 23, 259, 506
Hpy188III TCNNGA 2 cut(s) 462, 512
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 266, 281, 365
HpyF3I CTNAG 1 cut(s) 20
KspI CCGCGG 1 cut(s) 340
LpnPI CCDG 9 cut(s) 27, 116, 143, 276, 284, 305, 398, 406, 433
Lsp1109I GCAGC 2 cut(s) 82, 377
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 292
MboII GAAGA 1 cut(s) 308
MfeI CAATTG 1 cut(s) 267
MluCI AATT 6 cut(s) 267, 287, 308, 329, 390, 499
MlyI GAGTC 2 cut(s) 289, 410
MseI TTAA 2 cut(s) 215, 333
MspA1I CMGCKG 2 cut(s) 95, 339
MspR9I CCNGG 2 cut(s) 131, 421
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 131, 421
MvnI CGCG 1 cut(s) 339
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 292
NspV TTCGAA 1 cut(s) 348
PceI AGGCCT 1 cut(s) 45
PkrI GCNGC 2 cut(s) 97, 367
PleI GAGTC 2 cut(s) 289, 410
PpsI GAGTC 2 cut(s) 289, 410
Psp6I CCWGG 2 cut(s) 129, 419
PspGI CCWGG 2 cut(s) 129, 419
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 468, 479
RsaNI GTAC 2 cut(s) 467, 478
SacII CCGCGG 1 cut(s) 340
SaqAI TTAA 2 cut(s) 215, 333
SatI GCNGC 2 cut(s) 96, 366
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 289, 410
ScrFI CCNGG 2 cut(s) 131, 421
SetI ASST 5 cut(s) 97, 135, 370, 425, 488
Sfr303I CCGCGG 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 348
SgrBI CCGCGG 1 cut(s) 340
Sse9I AATT 6 cut(s) 267, 287, 308, 329, 390, 499
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 3 cut(s) 173, 337, 339
SspMI CTAG 1 cut(s) 47
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 129, 419
TaqI TCGA 2 cut(s) 348, 461
TasI AATT 6 cut(s) 267, 287, 308, 329, 390, 499
TatI WGTACW 2 cut(s) 466, 477
Tru1I TTAA 2 cut(s) 215, 333
Tru9I TTAA 2 cut(s) 215, 333
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 95, 365
Tsp45I GTSAC 1 cut(s) 292
TspGWI ACGGA 1 cut(s) 155
XapI RAATTY 3 cut(s) 308, 329, 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.