Rorug06G0023500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000571
Physical Location & Seq
Forward (+)
2898844 .. 2902817
3974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0023500.1

Sequence Viewer

Length: 960 bp
ATGGCGGTGGCCTCCACATCTCTCGCCTCCCAACTCTCCGGCCCTAAATCTCTCTCCCAGTCCTACTCCGGCCTCCGACGATCGTGCCCCAAACTCGACCATTCCCACTCCCCTCGGTCCCTCTTTCAACACCTCCACTCCCACCTCAGCCTCTCCTCCTCCCGCAAGGCCTCCAGAGCCGTCGTCGCCATGGCCGGCACCGGAAAGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGCGCAAAATTGGAACCTGATGTTGATGTTGTTGTAGCACCACCATTTCTTTACTTGGATCAGGTGAAGAGCTCACTAACAGATCGCATTGAGATATCTGGTCAAAATTCTTGGGTTGGAAAAGGTGGGGCTTTCACTGGGGAAATCAGTGTGGAACAATTGAAGGATATTGGCTGCAAATGGGTTATTCTTGGGCACTCTGAGCGGAGACATGTAATTGGTGAAGATGATCAGTTTATAGGAAAGAAAGCTGCCTATGCCTTGAATGAGGGTCTGGGAGTAATTGCTTGCATTGGTGAGAAGTTAGAAGAAAGGGAAGCCGGGAAAACTTTTGACGTCTGTTTCCAGCAACTGAAGGCTTTTGCAGATGCTGTACCTAGTTGGGAAAATATAGTTGTTGCTTACGAGCCTGTATGGGCCATTGGAACCGGTAAGGTGGCCAGTCCACAACAAGCTCAGGAAGTACATGTAGCAGTTCGTGATTGGCTCAAAAAGAATGTGTCAGCAGAAGTTGCATCTAAAACCAGAATTATTTATGGAGGATCTGTAAACGGAGGCAATTCTGCTGAGCTTGCAAAGGAGGAAGATATTGATGGGTTTCTAGTTGGTGGTGCTTCCTTGAAGGGGCCTGAATTTGCTACCATTGTTAATGCTGTAACATCCAAGAAAGTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

34.04

Weight (kDa)

8.18

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIM PF00121 71 - 311 6.8e-92 Triosephosphate isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 618
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 484
AciI CCGC 3 cut(s) 5, 163, 484
AclWI GGATC 2 cut(s) 345, 829
AcoI YGGCCR 2 cut(s) 192, 717
AcsI RAATTY 2 cut(s) 385, 911
AcuI CTGAAG 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 615
AfaI GTAC 2 cut(s) 654, 744
AfiI CCNNNNNNNGG 1 cut(s) 903
AflIII ACRYGT 2 cut(s) 490, 745
AgeI ACCGGT 1 cut(s) 707
AgsI TTSAA 4 cut(s) 128, 442, 544, 901
AluBI AGCT 5 cut(s) 262, 351, 530, 734, 850
AluI AGCT 5 cut(s) 262, 351, 530, 734, 850
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 2 cut(s) 345, 829
AlwNI CAGNNNCTG 2 cut(s) 631, 650
AoxI GGCC 8 cut(s) 9, 40, 70, 168, 192, 696, 717, 905
ApeKI GCWGC 3 cut(s) 453, 530, 953
ApoI RAATTY 2 cut(s) 385, 911
AsiGI ACCGGT 1 cut(s) 707
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 4 cut(s) 41, 117, 696, 905
AsuC2I CCSGG 1 cut(s) 601
AsuHPI GGTGA 3 cut(s) 355, 512, 587
AvaII GGWCC 1 cut(s) 117
BaeGI GKGCMC 2 cut(s) 89, 477
BalI TGGCCA 1 cut(s) 719
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 440, 517, 940
BccI CCATC 1 cut(s) 866
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 601
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 3 cut(s) 263, 657, 881
BisI GCNGC 3 cut(s) 454, 531, 954
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 3 cut(s) 455, 532, 955
Bme1390I CCNGG 1 cut(s) 601
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 4 cut(s) 41, 117, 696, 905
BmiI GGNNCC 5 cut(s) 119, 199, 294, 706, 906
BmrFI CCNGG 1 cut(s) 601
BmrI ACTGGG 2 cut(s) 52, 426
BmsI GCATC 2 cut(s) 637, 803
BmuI ACTGGG 2 cut(s) 52, 426
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 2 cut(s) 146, 735
Bpu1102I GCTNAGC 1 cut(s) 846
BpuMI CCSGG 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 615
BsaJI CCNNGG 2 cut(s) 113, 189
BsaWI WCCGGW 2 cut(s) 200, 707
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 810, 840
Bsc4I CCNNNNNNNGG 1 cut(s) 903
Bse118I RCCGGY 2 cut(s) 194, 707
Bse1I ACTGG 4 cut(s) 58, 230, 421, 720
BseDI CCNNGG 2 cut(s) 113, 189
BseGI GGATG 1 cut(s) 938
BseLI CCNNNNNNNGG 1 cut(s) 903
BseMII CTCAG 4 cut(s) 160, 471, 749, 837
BseNI ACTGG 4 cut(s) 58, 230, 421, 720
BseRI GAGGAG 2 cut(s) 145, 148
BseSI GKGCMC 2 cut(s) 89, 477
BseXI GCAGC 3 cut(s) 440, 517, 940
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 8 cut(s) 11, 42, 72, 170, 194, 698, 719, 907
BshNI GGYRCC 1 cut(s) 197
BshTI ACCGGT 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 6 cut(s) 39, 69, 195, 201, 600, 708
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 903
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 8 cut(s) 11, 42, 72, 170, 194, 698, 719, 907
Bsp1286I GDGCHC 3 cut(s) 89, 353, 477
Bsp143I GATC 5 cut(s) 80, 337, 361, 508, 821
Bsp1720I GCTNAGC 1 cut(s) 846
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 3 cut(s) 5, 163, 484
BspANI GGCC 8 cut(s) 11, 42, 72, 170, 194, 698, 719, 907
BspCNI CTCAG 4 cut(s) 159, 472, 748, 838
BspLI GGNNCC 5 cut(s) 119, 199, 294, 706, 906
BspPI GGATC 2 cut(s) 345, 829
BspQI GCTCTTC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 484
BsrFI RCCGGY 2 cut(s) 194, 707
BsrI ACTGG 4 cut(s) 58, 230, 421, 720
BssAI RCCGGY 2 cut(s) 194, 707
BssECI CCNNGG 2 cut(s) 113, 189
BssMI GATC 5 cut(s) 80, 337, 361, 508, 821
BssNI GRCGYC 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 791
BstC8I GCNNGC 4 cut(s) 196, 260, 568, 852
BstDEI CTNAG 4 cut(s) 146, 480, 735, 846
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 938
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 5 cut(s) 83, 340, 364, 511, 824
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 5 cut(s) 80, 337, 361, 508, 821
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 6 cut(s) 176, 185, 481, 536, 791, 851
BstNSI RCATGY 2 cut(s) 494, 749
BstSCI CCNGG 1 cut(s) 599
BstSLI GKGCMC 2 cut(s) 89, 477
BstV1I GCAGC 3 cut(s) 440, 517, 940
BstX2I RGATCY 1 cut(s) 821
BstYI RGATCY 1 cut(s) 821
BsuRI GGCC 8 cut(s) 11, 42, 72, 170, 194, 698, 719, 907
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 938
BtsIMutI CAGTG 2 cut(s) 414, 433
Cac8I GCNNGC 4 cut(s) 196, 260, 568, 852
CaiI CAGNNNCTG 2 cut(s) 631, 650
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 2 cut(s) 194, 707
Cfr13I GGNCC 4 cut(s) 41, 117, 696, 905
Csp6I GTAC 2 cut(s) 653, 743
CspAI ACCGGT 1 cut(s) 707
CviAII CATG 3 cut(s) 190, 491, 746
CviQI GTAC 2 cut(s) 653, 743
DdeI CTNAG 4 cut(s) 146, 480, 735, 846
DpnI GATC 5 cut(s) 82, 339, 363, 510, 823
DpnII GATC 5 cut(s) 80, 337, 361, 508, 821
EaeI YGGCCR 2 cut(s) 192, 717
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 189
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 905
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 3 cut(s) 193, 494, 749
FaiI YATR 8 cut(s) 191, 492, 518, 537, 671, 694, 747, 816
FaqI GGGAC 1 cut(s) 103
FatI CATG 3 cut(s) 189, 490, 745
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 3 cut(s) 454, 531, 954
FokI GGATG 1 cut(s) 925
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 3 cut(s) 454, 531, 954
FspBI CTAG 3 cut(s) 263, 657, 881
GlaI GCGC 1 cut(s) 283
GluI GCNGC 3 cut(s) 454, 531, 954
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 8 cut(s) 11, 42, 72, 170, 194, 698, 719, 907
HapII CCGG 6 cut(s) 39, 69, 195, 201, 600, 708
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 3 cut(s) 193, 494, 749
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 1 cut(s) 248
HpaII CCGG 6 cut(s) 39, 69, 195, 201, 600, 708
HphI GGTGA 3 cut(s) 355, 512, 587
Hpy166II GTNNAC 2 cut(s) 725, 829
Hpy188I TCNGA 3 cut(s) 77, 271, 481
Hpy188III TCNNGA 3 cut(s) 174, 737, 758
Hpy8I GTNNAC 2 cut(s) 725, 829
Hpy99I CGWCG 3 cut(s) 81, 185, 188
HpyAV CCTTC 3 cut(s) 436, 628, 895
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 5 cut(s) 456, 570, 644, 794, 854
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 185, 481, 536, 791, 851
HpyF3I CTNAG 4 cut(s) 146, 480, 735, 846
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 3 cut(s) 193, 494, 749
HspAI GCGC 1 cut(s) 282
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 5 cut(s) 80, 337, 361, 508, 821
LguI GCTCTTC 1 cut(s) 341
Lsp1109I GCAGC 3 cut(s) 440, 517, 940
LweI GCATC 2 cut(s) 637, 803
MaeI CTAG 3 cut(s) 263, 657, 881
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 934
MalI GATC 5 cut(s) 82, 339, 363, 510, 823
MbiI CCGCTC 1 cut(s) 484
MboI GATC 5 cut(s) 80, 337, 361, 508, 821
MboII GAAGA 4 cut(s) 358, 515, 599, 875
MfeI CAATTG 1 cut(s) 437
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 3 cut(s) 89, 353, 477
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 8 cut(s) 287, 385, 437, 495, 561, 807, 838, 911
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 100, 376
Mox20I TGGCCA 1 cut(s) 719
MroNI GCCGGC 1 cut(s) 194
MscI TGGCCA 1 cut(s) 719
MseI TTAA 2 cut(s) 275, 927
Msp20I TGGCCA 1 cut(s) 719
MspI CCGG 6 cut(s) 39, 69, 195, 201, 600, 708
MspR9I CCNGG 1 cut(s) 601
MunI CAATTG 1 cut(s) 437
MwoI GCNNNNNNNGC 6 cut(s) 176, 185, 481, 536, 791, 851
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 601
NcoI CCATGG 1 cut(s) 189
NdeII GATC 5 cut(s) 80, 337, 361, 508, 821
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 3 cut(s) 193, 494, 749
NlaIV GGNNCC 5 cut(s) 119, 199, 294, 706, 906
NspI RCATGY 2 cut(s) 494, 749
PceI AGGCCT 1 cut(s) 170
PciI ACATGT 2 cut(s) 490, 745
PciSI GCTCTTC 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 196
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 3 cut(s) 455, 532, 955
Ple19I CGATCG 1 cut(s) 83
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PscI ACATGT 2 cut(s) 490, 745
Psp124BI GAGCTC 1 cut(s) 353
PspN4I GGNNCC 5 cut(s) 119, 199, 294, 706, 906
PspPI GGNCC 4 cut(s) 41, 117, 696, 905
PstNI CAGNNNCTG 2 cut(s) 631, 650
PsuI RGATCY 1 cut(s) 821
PvuI CGATCG 1 cut(s) 83
RsaI GTAC 2 cut(s) 654, 744
RsaNI GTAC 2 cut(s) 653, 743
SacI GAGCTC 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 275, 927
SatI GCNGC 3 cut(s) 454, 531, 954
Sau3AI GATC 5 cut(s) 80, 337, 361, 508, 821
Sau96I GGNCC 4 cut(s) 41, 117, 696, 905
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 601
SduI GDGCHC 3 cut(s) 89, 353, 477
SfaNI GCATC 2 cut(s) 637, 803
SinI GGWCC 1 cut(s) 117
Sse9I AATT 8 cut(s) 287, 385, 437, 495, 561, 807, 838, 911
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 3 cut(s) 5, 163, 484
SspMI CTAG 3 cut(s) 263, 657, 881
SstI GAGCTC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 599
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 618
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 105
TasI AATT 8 cut(s) 287, 385, 437, 495, 561, 807, 838, 911
TatI WGTACW 1 cut(s) 742
Tru1I TTAA 2 cut(s) 275, 927
Tru9I TTAA 2 cut(s) 275, 927
TscAI CASTG 2 cut(s) 421, 433
TseI GCWGC 3 cut(s) 453, 530, 953
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 2 cut(s) 421, 433
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 2 cut(s) 385, 911
XceI RCATGY 2 cut(s) 494, 749
XspI CTAG 3 cut(s) 263, 657, 881
ZraI GACGTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.