Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

47745825 .. 47749301

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTTACATCATGATTAATGTGTTGTGTAAACAAGGCAAGTTGAACAAGGCGAAGGAGTTTCTTGGGTTTATGGAGGCCTACTGTTGTTGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATCAAAGGTAGAGGTGTTCAGCCGGATTCTTACATGTATGGATTGCTTCTTAGTGGGATGTGCAAGCAAGGAAGACTTGCTGAAGCATCCGGTCTTTTTGATAAAATGCTGCAAATCGGGCTGCTTCCGATTGCTGTTACTTATAACACGTTGATTGATGGTTATTGCAATAAGGGTGATCTGGACAGGGCTTTTGGTTATAGAGATGAGATGGTGAGGAAGGGTATAATGCCGACGGTGGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAAGTCTGGGAATGCAAAGAAAGTGTTTGTCCTTCACGATGAAATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAAATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCATGCATTTTCGCTTTTGAGGCAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACGTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTCAGGAAGCTCGGGAACTTCTGGATGAGATAAAGACAAGGGGAATTAAGAGTGATTACATTAGGTACAACACCCTCATTAGTGGACATAGTAAGCGAGGTGATATGAATGATGCCTTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

306

Amino Acids

34.61

Weight (kDa)

9.08

Isoelectric Point (pI)

23.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	7 - 37	1.3e-06	PPR repeat
PPR_3	PF13812	50 - 106	7.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	57 - 89	1.2e-09	PPR repeat
PPR_1	PF12854	93 - 125	3.6e-11	PPR repeat
PPR_2	PF13041	98 - 133	8e-11	PPR repeat family
PPR	PF01535	99 - 129	7.6e-10	PPR repeat
PPR_3	PF13812	134 - 191	1.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	134 - 156	4.8e-07	PPR repeat family
PPR_1	PF12854	138 - 170	2e-11	PPR repeat
PPR_2	PF13041	142 - 190	4.8e-16	PPR repeat family
PPR	PF01535	145 - 175	2.3e-09	PPR repeat
PPR_long	PF17177	181 - 291	5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	201 - 257	1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	208 - 240	6.2e-11	PPR repeat
TPR_24	PF23276	209 - 305	8e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	212 - 260	1.3e-16	PPR repeat family
PPR	PF01535	215 - 244	2.4e-07	PPR repeat
PPR_1	PF12854	245 - 275	3.9e-11	PPR repeat
PPR_2	PF13041	247 - 283	4e-10	PPR repeat family
PPR	PF01535	250 - 280	8.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AclWI	GGATC	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	34, 755, 860
AflIII	ACRYGT	2 cut(s)	192, 306
AgsI	TTSAA	4 cut(s)	13, 79, 652, 913
AluBI	AGCT	1 cut(s)	803
AluI	AGCT	1 cut(s)	803
AlwI	GGATC	1 cut(s)	645
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	268, 280, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AseI	ATTAAT	2 cut(s)	51, 453
AspLEI	GCGC	1 cut(s)	777
AsuHPI	GGTGA	3 cut(s)	347, 385, 905
AvaI	CYCGRG	1 cut(s)	804
BanII	GRGCYC	2 cut(s)	142, 531
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	255, 267, 764
BccI	CCATC	4 cut(s)	311, 364, 659, 712
BfmI	CTRYAG	1 cut(s)	778
BfoI	RGCGCY	1 cut(s)	778
BisI	GCNGC	3 cut(s)	269, 281, 778
BlsI	GCNGC	3 cut(s)	270, 282, 779
BmeT110I	CYCGRG	1 cut(s)	804
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	3 cut(s)	254, 418, 895
BpiI	GAAGAC	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	438
BsaWI	WCCGGW	2 cut(s)	248, 634
Bse1I	ACTGG	1 cut(s)	24
BseGI	GGATG	4 cut(s)	222, 245, 736, 823
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	255, 267, 764
BshFI	GGCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	3 cut(s)	182, 249, 635
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	142, 531
Bsp143I	GATC	4 cut(s)	15, 147, 337, 637
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	782
BspPI	GGATC	1 cut(s)	645
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	15, 147, 337, 637
Bst4CI	ACNGT	2 cut(s)	119, 397
Bst6I	CTCTTC	2 cut(s)	402, 572
BstBAI	YACGTR	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	224, 696
BstDEI	CTNAG	3 cut(s)	141, 209, 534
BstF5I	GGATG	4 cut(s)	222, 245, 736, 823
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	4 cut(s)	18, 150, 340, 640
BstMBI	GATC	4 cut(s)	15, 147, 337, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 712
BstNSI	RCATGY	2 cut(s)	196, 698
BstSFI	CTRYAG	1 cut(s)	778
BstSNI	TACGTA	1 cut(s)	438
BstV1I	GCAGC	3 cut(s)	255, 267, 764
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	4 cut(s)	222, 245, 736, 823
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	224, 696
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	777
Csp6I	GTAC	3 cut(s)	33, 754, 859
CviAII	CATG	3 cut(s)	46, 193, 695
CviJI	RGCY	8 cut(s)	113, 140, 181, 280, 350, 459, 529, 803
CviKI_1	RGCY	8 cut(s)	113, 140, 181, 280, 350, 459, 529, 803
CviQI	GTAC	3 cut(s)	33, 754, 859
DdeI	CTNAG	3 cut(s)	141, 209, 534
DpnI	GATC	4 cut(s)	17, 149, 339, 639
DpnII	GATC	4 cut(s)	15, 147, 337, 637
Eam1104I	CTCTTC	2 cut(s)	402, 572
EarI	CTCTTC	2 cut(s)	402, 572
Eco105I	TACGTA	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	142, 531
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	804
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	142, 531
FaeI	CATG	3 cut(s)	49, 196, 698
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	3 cut(s)	45, 192, 694
Fnu4HI	GCNGC	3 cut(s)	269, 281, 778
FokI	GGATG	4 cut(s)	229, 232, 723, 830
FriOI	GRGCYC	2 cut(s)	142, 531
Fsp4HI	GCNGC	3 cut(s)	269, 281, 778
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	3 cut(s)	269, 281, 778
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	3 cut(s)	182, 249, 635
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	3 cut(s)	49, 196, 698
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	3 cut(s)	182, 249, 635
HphI	GGTGA	3 cut(s)	347, 385, 905
Hpy166II	GTNNAC	2 cut(s)	65, 878
Hpy188I	TCNGA	2 cut(s)	144, 288
Hpy188III	TCNNGA	9 cut(s)	46, 341, 425, 448, 500, 740, 797, 806, 815
Hpy8I	GTNNAC	2 cut(s)	65, 878
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	6 cut(s)	82, 373, 406, 506, 724, 919
HpyCH4III	ACNGT	2 cut(s)	119, 397
HpyCH4IV	ACGT	3 cut(s)	308, 437, 752
HpyCH4V	TGCA	9 cut(s)	126, 222, 271, 327, 465, 479, 698, 769, 780
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 712
HpyF3I	CTNAG	3 cut(s)	141, 209, 534
HpySE526I	ACGT	3 cut(s)	308, 437, 752
Hsp92II	CATG	3 cut(s)	49, 196, 698
HspAI	GCGC	1 cut(s)	775
Kzo9I	GATC	4 cut(s)	15, 147, 337, 637
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	3 cut(s)	255, 267, 764
LweI	GCATC	3 cut(s)	254, 418, 895
MaeII	ACGT	3 cut(s)	308, 437, 752
MaeIII	GTNAC	2 cut(s)	295, 748
MalI	GATC	4 cut(s)	17, 149, 339, 639
MboI	GATC	4 cut(s)	15, 147, 337, 637
MboII	GAAGA	5 cut(s)	25, 243, 419, 589, 622
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	142, 531
MluCI	AATT	1 cut(s)	837
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	8 cut(s)	103, 128, 164, 369, 583, 705, 878, 884
Mph1103I	ATGCAT	1 cut(s)	700
MseI	TTAA	3 cut(s)	51, 453, 840
MslI	CAYNNNNRTG	1 cut(s)	741
MspI	CCGG	3 cut(s)	182, 249, 635
Mva1269I	GAATGC	1 cut(s)	481
MwoI	GCNNNNNNNGC	2 cut(s)	277, 712
NdeII	GATC	4 cut(s)	15, 147, 337, 637
NlaIII	CATG	3 cut(s)	49, 196, 698
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	2 cut(s)	196, 698
PaeI	GCATGC	1 cut(s)	698
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	113
PciI	ACATGT	1 cut(s)	192
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	270, 282, 779
Ppu21I	YACGTR	1 cut(s)	438
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	2 cut(s)	51, 453
PsiI	TTATAA	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	3 cut(s)	34, 755, 860
RsaNI	GTAC	3 cut(s)	33, 754, 859
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	51, 453, 840
SatI	GCNGC	3 cut(s)	269, 281, 778
Sau3AI	GATC	4 cut(s)	15, 147, 337, 637
SduI	GDGCHC	2 cut(s)	142, 531
SfaNI	GCATC	3 cut(s)	254, 418, 895
SfcI	CTRYAG	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	741
SnaBI	TACGTA	1 cut(s)	438
SphI	GCATGC	1 cut(s)	698
Sse9I	AATT	1 cut(s)	837
SseBI	AGGCCT	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	119, 397
TaiI	ACGT	3 cut(s)	311, 440, 755
TasI	AATT	1 cut(s)	837
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	51, 453, 840
Tru9I	TTAA	3 cut(s)	51, 453, 840
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	268, 280, 777
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	6 cut(s)	519, 599, 725, 743, 759, 914
TspRI	CASTG	1 cut(s)	31
VspI	ATTAAT	2 cut(s)	51, 453
XceI	RCATGY	2 cut(s)	196, 698
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.