Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

11176639 .. 11177187

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAACGAGGCAGATAACTTGTTTGAGAAGATACTGTGTAAGGGTGTTCTTCCGGATCTTGTGATGTTCAGTGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTCGAGGAAGCTCGGGAACTTCTGGATGAGATGAAGGCAAGGGGAATTAAGCTTGATTACATTTGTTACAACACCCTCGTTAGTGGACATAGTAAACGAGGTCTATCCAAAAACCAAGAAGGTGATCTTGCTCAAGAGCTCCTTAAAGAAATGATGAGCAGAGGGATTACTCCAGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAGAAAGGGCGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

152

Amino Acids

17.21

Weight (kDa)

5.15

Isoelectric Point (pI)

22.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	5 - 96	1.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	7 - 63	3.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	14 - 46	2.4e-11	PPR repeat
PPR_2	PF13041	18 - 66	5.3e-16	PPR repeat family
PPR	PF01535	21 - 50	1.8e-07	PPR repeat
TPR_24	PF23276	21 - 102	7.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	51 - 82	9e-14	PPR repeat
PPR_2	PF13041	53 - 102	2e-16	PPR repeat family
PPR	PF01535	56 - 86	2.9e-09	PPR repeat
PPR_3	PF13812	77 - 138	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	104 - 139	8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	52
AclWI	GGATC	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	434
AluBI	AGCT	3 cut(s)	221, 262, 349
AluI	AGCT	3 cut(s)	221, 262, 349
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	77, 130
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	52
BseGI	GGATG	2 cut(s)	154, 241
BseMII	CTCAG	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	55, 334
BspCNI	CTCAG	1 cut(s)	453
BspEI	TCCGGA	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	63
BssMI	GATC	2 cut(s)	55, 334
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	154, 241
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	58, 337
BstMBI	GATC	2 cut(s)	55, 334
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	154, 241
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	455
CfoI	GCGC	1 cut(s)	195
CviAII	CATG	1 cut(s)	456
CviJI	RGCY	3 cut(s)	221, 262, 349
CviKI_1	RGCY	3 cut(s)	221, 262, 349
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	2 cut(s)	57, 336
DpnII	GATC	2 cut(s)	55, 334
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	1 cut(s)	459
FaiI	YATR	4 cut(s)	107, 300, 397, 457
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 336, 368
FatI	CATG	1 cut(s)	455
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	141, 248
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	196
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	459
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	260
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	296, 305
Hpy188I	TCNGA	2 cut(s)	408, 443
Hpy188III	TCNNGA	7 cut(s)	53, 158, 224, 233, 344, 383, 456
Hpy8I	GTNNAC	2 cut(s)	296, 305
HpyAV	CCTTC	3 cut(s)	142, 238, 323
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	116, 187, 198
HpyF3I	CTNAG	1 cut(s)	440
Hsp92II	CATG	1 cut(s)	459
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	55, 334
LmnI	GCTCC	2 cut(s)	109, 354
LpnPI	CCDG	6 cut(s)	66, 171, 184, 189, 218, 396
Lsp1109I	GCAGC	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	166, 275
MalI	GATC	2 cut(s)	57, 336
MboI	GATC	2 cut(s)	55, 334
MboII	GAAGA	2 cut(s)	40, 41
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	255, 417, 434
MnlI	CCTC	7 cut(s)	123, 208, 296, 302, 365, 406, 424
MroI	TCCGGA	1 cut(s)	52
MseI	TTAA	2 cut(s)	258, 354
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	55, 334
NlaIII	CATG	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	258, 354
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	55, 334
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	153, 223, 264, 313, 334, 351
SfcI	CTRYAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	255, 417, 434
SstI	GAGCTC	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	255, 417, 434
Tru1I	TTAA	2 cut(s)	258, 354
Tru9I	TTAA	2 cut(s)	258, 354
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	6 cut(s)	17, 143, 161, 177, 257, 444
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.