Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

10741224 .. 10743963

Gene Structure 2740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGAAATCTCACAAACTCCTAAACCCTCAGACCCTTAAACCCCAAATACTGGGATCCATTTTCCTCCCAACCCAATCTCTCTGTTCCCTCACCCAACCAGACCCTCCTCCACCCATCACCCACCACTCCCTCCTCAATTCCATCCAAACTTGTCAGTGGCATTTCATCGAACACCTTCCGCCCAACCTTCCCTCCTCTCTAATCTCCCAAACCCTCTTCCATCTCCACCAAACCCCTCACCTTGTCCATCAATTCACATCCCACATCGACTTTCCCCGCCTCGCAATCCAAACCCAATGCCTCGCCGTCGCCATTGTCGCCGCCCTCCCTTCCCCAAAACCCTCCCTGGAGCTCCTGAAGCAACTCCTCGGCAGCGGCATTGCTCCGGTTCGGGACGTTTTCGACTCGCTGGCTCGTGCCCGAGTGCGCTTGACTGCCCAAAGCGGCGTCGTTTTGGACTTGCTGGTAAGTGCTTGCTGTGAATTGAAGAGGGCTGATGAGGCTTTTGAGTGTTTTAAATTGATGACGAGTGGAAATGTCATGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGTTGTGCAAAGGAGGCAAGTTGAACAAGGCGAAGGAGTTTCTTGGGTTTATGGAGGTTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACTATCATTCATGGGTTTTGTTTGAGAAGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATGAAAGGGAGAGGAGTTCAGCCAGATTCTTACACGTATGGATTGCTTATTAATGGGATGTGTAAGGAGAGAAGACTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTGGGCTGCTTCCGAGTGCTGTTACTTATAACACATTGATTGATGGTTATTGCAATAACGGTGATCTGGACAGGGCTTTCGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCCACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTGAAGCTGATTGCATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAGGCGTTTATCCTTCACGATGAAATGTTGAGCAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTACCAGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGGAGATGGATAAAATGAAGGTTAATCCAGATGAAGTCACTTACAATACCCTAATGCAAGGGCGCTGCAGGACAGGGAAAGTTGAGGAAGCTCGGGAACTTCTGGATGAGATGAAGAGAAGAGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTCGAGATGAGATGTTGAGTAGAGGTTTCAATCCTACACTTCTAACGTACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCAAGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAAAAAGGGCGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

626

Amino Acids

70.44

Weight (kDa)

8.31

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	183 - 231	2.8e-10	PPR repeat family
PPR_3	PF13812	206 - 262	2.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	216 - 246	7.4e-08	PPR repeat
PPR_2	PF13041	218 - 265	6.1e-14	PPR repeat family
PPR_1	PF12854	249 - 281	1.5e-09	PPR repeat
PPR_2	PF13041	252 - 301	7e-17	PPR repeat family
PPR_long	PF17177	275 - 366	1.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	276 - 331	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	283 - 315	1e-11	PPR repeat
PPR	PF01535	290 - 320	7.4e-07	PPR repeat
PPR_2	PF13041	295 - 335	6.6e-12	PPR repeat family
PPR_3	PF13812	311 - 366	8.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	319 - 351	1.6e-12	PPR repeat
PPR_2	PF13041	322 - 369	2.2e-16	PPR repeat family
PPR	PF01535	325 - 355	7.6e-10	PPR repeat
PPR_2	PF13041	357 - 406	8.1e-16	PPR repeat family
PPR_long	PF17177	376 - 439	4.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	382 - 441	9.7e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	385 - 448	3.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	388 - 420	7.8e-13	PPR repeat
PPR_2	PF13041	392 - 440	2.6e-16	PPR repeat family
PPR	PF01535	395 - 425	2.1e-09	PPR repeat
PPR_long	PF17177	432 - 547	1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	451 - 507	6.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	458 - 490	3.1e-11	PPR repeat
TPR_24	PF23276	459 - 556	1e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	462 - 511	5.2e-17	PPR repeat family
PPR	PF01535	465 - 494	2e-07	PPR repeat
PPR_1	PF12854	495 - 526	1.5e-11	PPR repeat
PPR_2	PF13041	497 - 543	3.8e-18	PPR repeat family
PPR	PF01535	500 - 530	9.8e-09	PPR repeat
PPR_long	PF17177	515 - 612	9.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	521 - 578	3.1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	528 - 560	6.6e-10	PPR repeat
PPR_2	PF13041	532 - 581	1.2e-17	PPR repeat family
PPR	PF01535	535 - 565	9.4e-08	PPR repeat
PPR_1	PF12854	563 - 596	1.2e-08	PPR repeat
PPR_2	PF13041	567 - 613	4.4e-13	PPR repeat family
PPR	PF01535	571 - 600	3.1e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	771, 981, 1727
Acc36I	ACCTGC	1 cut(s)	1206
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	5 cut(s)	179, 277, 321, 375, 444
AclWI	GGATC	2 cut(s)	48, 61
AcsI	RAATTY	1 cut(s)	1856
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	661, 1715
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	2 cut(s)	627, 870
AgsI	TTSAA	7 cut(s)	487, 592, 640, 706, 1402, 1663, 1696
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	352, 1133, 1553, 1771
AluI	AGCT	4 cut(s)	352, 1133, 1553, 1771
Alw21I	GWGCWC	2 cut(s)	354, 1773
AlwI	GGATC	2 cut(s)	48, 61
Ama87I	CYCGRG	2 cut(s)	420, 1554
ApeKI	GCWGC	3 cut(s)	372, 958, 1527
ApoI	RAATTY	1 cut(s)	1856
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
AseI	ATTAAT	3 cut(s)	678, 888, 1203
Asp700I	GAANNNNTTC	1 cut(s)	174
AspA2I	CCTAGG	1 cut(s)	545
AspLEI	GCGC	2 cut(s)	429, 1527
AsuHPI	GGTGA	9 cut(s)	82, 109, 230, 1025, 1063, 1135, 1655, 1766, 1798
AsuII	TTCGAA	1 cut(s)	584
AvaI	CYCGRG	2 cut(s)	420, 1554
AvrII	CCTAGG	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	53
BanII	GRGCYC	4 cut(s)	354, 820, 1281, 1773
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	2 cut(s)	354, 1773
BbvI	GCAGC	3 cut(s)	384, 945, 1514
BccI	CCATC	8 cut(s)	122, 149, 228, 255, 989, 1042, 1409, 1462
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	1528
BfoI	RGCGCY	1 cut(s)	1528
BfuAI	ACCTGC	1 cut(s)	1206
BglII	AGATCT	1 cut(s)	1387
BisI	GCNGC	6 cut(s)	321, 373, 376, 445, 959, 1528
BlnI	CCTAGG	1 cut(s)	545
BlsI	GCNGC	6 cut(s)	322, 374, 377, 446, 960, 1529
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	2 cut(s)	420, 1554
BmiI	GGNNCC	2 cut(s)	55, 1173
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	1168, 1645
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	916
BpmI	CTGGAG	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	1749
BsaAI	YACGTR	2 cut(s)	873, 1188
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	4 cut(s)	345, 367, 545, 1071
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	54, 651
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	4 cut(s)	345, 367, 545, 1071
BseGI	GGATG	4 cut(s)	141, 257, 900, 1573
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	41, 833
BseNI	ACTGG	2 cut(s)	54, 651
BseRI	GAGGAG	5 cut(s)	96, 122, 184, 356, 864
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	384, 945, 1514
BsiHKAI	GWGCWC	2 cut(s)	354, 1773
BsiHKCI	CYCGRG	2 cut(s)	420, 1554
BsiSI	CCGG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	1231
BsoBI	CYCGRG	2 cut(s)	420, 1554
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	5 cut(s)	354, 421, 820, 1281, 1773
Bsp143I	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
BspACI	CCGC	5 cut(s)	179, 277, 321, 375, 444
BspCNI	CTCAG	2 cut(s)	40, 832
BspHI	TCATGA	3 cut(s)	672, 1099, 1877
BspLI	GGNNCC	2 cut(s)	55, 1173
BspMAI	CTGCAG	1 cut(s)	1532
BspMI	ACCTGC	1 cut(s)	1206
BspPI	GGATC	2 cut(s)	48, 61
BspT104I	TTCGAA	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	54, 651
BssECI	CCNNGG	4 cut(s)	345, 367, 545, 1071
BssMI	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
BssNI	GRCGYC	1 cut(s)	447
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	760, 1013, 1075
Bst6I	CTCTTC	6 cut(s)	221, 482, 1152, 1322, 1571, 1576
BstACI	GRCGYC	1 cut(s)	447
BstBAI	YACGTR	2 cut(s)	873, 1188
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	411, 475, 1446
BstDEI	CTNAG	4 cut(s)	27, 552, 819, 1284
BstDSI	CCRYGG	1 cut(s)	1071
BstF5I	GGATG	4 cut(s)	141, 257, 900, 1573
BstH2I	RGCGCY	1 cut(s)	1528
BstHHI	GCGC	2 cut(s)	429, 1527
BstKTI	GATC	6 cut(s)	56, 645, 828, 1018, 1390, 1759
BstMBI	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 358, 500, 696, 1235
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	1528
BstSLI	GKGCMC	1 cut(s)	421
BstSNI	TACGTA	1 cut(s)	1188
BstV1I	GCAGC	3 cut(s)	384, 945, 1514
BstV2I	GAAGAC	1 cut(s)	916
BstX2I	RGATCY	2 cut(s)	53, 1387
BstYI	RGATCY	2 cut(s)	53, 1387
BtgI	CCRYGG	1 cut(s)	1071
BtsCI	GGATG	4 cut(s)	141, 257, 900, 1573
BtsIMutI	CAGTG	2 cut(s)	161, 658
BveI	ACCTGC	1 cut(s)	1206
Cac8I	GCNNGC	3 cut(s)	411, 475, 1446
CciI	TCATGA	3 cut(s)	672, 1099, 1877
CfoI	GCGC	2 cut(s)	429, 1527
CseI	GACGC	2 cut(s)	436, 912
Csp6I	GTAC	2 cut(s)	660, 1714
CviAII	CATG	7 cut(s)	541, 628, 673, 785, 1100, 1141, 1878
CviQI	GTAC	2 cut(s)	660, 1714
DdeI	CTNAG	4 cut(s)	27, 552, 819, 1284
DpnI	GATC	6 cut(s)	55, 644, 827, 1017, 1389, 1758
DpnII	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
DraI	TTTAAA	1 cut(s)	517
Eam1104I	CTCTTC	6 cut(s)	221, 482, 1152, 1322, 1571, 1576
EarI	CTCTTC	6 cut(s)	221, 482, 1152, 1322, 1571, 1576
EciI	GGCGGA	1 cut(s)	168
Ecl136II	GAGCTC	2 cut(s)	352, 1771
Eco105I	TACGTA	1 cut(s)	1188
Eco130I	CCWWGG	1 cut(s)	545
Eco24I	GRGCYC	4 cut(s)	354, 820, 1281, 1773
Eco53kI	GAGCTC	2 cut(s)	352, 1771
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	2 cut(s)	420, 1554
EcoICRI	GAGCTC	2 cut(s)	352, 1771
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	545
EcoT38I	GRGCYC	4 cut(s)	354, 820, 1281, 1773
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	7 cut(s)	544, 631, 676, 788, 1103, 1144, 1881
FalI	AAGNNNNNCTT	4 cut(s)	1743, 1775, 1758, 1790
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	7 cut(s)	540, 627, 672, 784, 1099, 1140, 1877
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	6 cut(s)	321, 373, 376, 445, 959, 1528
FokI	GGATG	4 cut(s)	128, 244, 907, 1580
FriOI	GRGCYC	4 cut(s)	354, 820, 1281, 1773
Fsp4HI	GCNGC	6 cut(s)	321, 373, 376, 445, 959, 1528
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	2 cut(s)	428, 1526
GluI	GCNGC	6 cut(s)	321, 373, 376, 445, 959, 1528
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	1528
HapII	CCGG	1 cut(s)	386
HgaI	GACGC	2 cut(s)	436, 912
HhaI	GCGC	2 cut(s)	429, 1527
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	7 cut(s)	544, 631, 676, 788, 1103, 1144, 1881
Hin6I	GCGC	2 cut(s)	427, 1525
HinP1I	GCGC	2 cut(s)	427, 1525
HincII	GTYRAC	1 cut(s)	1080
HindII	GTYRAC	1 cut(s)	1080
HinfI	GANTC	5 cut(s)	404, 592, 863, 1096, 1874
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	9 cut(s)	82, 109, 230, 1025, 1063, 1135, 1655, 1766, 1798
Hpy166II	GTNNAC	3 cut(s)	1080, 1628, 1637
Hpy188I	TCNGA	4 cut(s)	30, 822, 966, 1830
Hpy8I	GTNNAC	3 cut(s)	1080, 1628, 1637
Hpy99I	CGWCG	2 cut(s)	311, 452
HpyCH4III	ACNGT	3 cut(s)	760, 1013, 1075
HpyCH4IV	ACGT	4 cut(s)	396, 872, 1187, 1712
HpyCH4V	TGCA	9 cut(s)	690, 1005, 1140, 1215, 1229, 1448, 1519, 1530, 1740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 358, 500, 696, 1235
HpyF3I	CTNAG	4 cut(s)	27, 552, 819, 1284
HpySE526I	ACGT	4 cut(s)	396, 872, 1187, 1712
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	7 cut(s)	544, 631, 676, 788, 1103, 1144, 1881
HspAI	GCGC	2 cut(s)	427, 1525
Kzo9I	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
LmnI	GCTCC	5 cut(s)	349, 357, 388, 1441, 1776
Lsp1109I	GCAGC	3 cut(s)	384, 945, 1514
LweI	GCATC	2 cut(s)	1168, 1645
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	4 cut(s)	396, 872, 1187, 1712
MaeIII	GTNAC	4 cut(s)	763, 973, 1498, 1607
MalI	GATC	6 cut(s)	55, 644, 827, 1017, 1389, 1758
MboI	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
MflI	RGATCY	2 cut(s)	53, 1387
MhlI	GDGCHC	5 cut(s)	354, 421, 820, 1281, 1773
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	5 cut(s)	317, 358, 500, 696, 1235
NdeII	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
NlaIII	CATG	7 cut(s)	544, 631, 676, 788, 1103, 1144, 1881
NlaIV	GGNNCC	2 cut(s)	55, 1173
NmeAIII	GCCGAG	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	1498
NspI	RCATGY	1 cut(s)	631
NspV	TTCGAA	1 cut(s)	584
PagI	TCATGA	3 cut(s)	672, 1099, 1877
PciI	ACATGT	1 cut(s)	627
PctI	GAATGC	1 cut(s)	1231
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	4 cut(s)	592, 863, 1096, 1874
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	322, 374, 377, 446, 960, 1529
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	2 cut(s)	873, 1188
PscI	ACATGT	1 cut(s)	627
PshBI	ATTAAT	3 cut(s)	678, 888, 1203
PsiI	TTATAA	3 cut(s)	771, 981, 1727
Psp124BI	GAGCTC	2 cut(s)	354, 1773
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	55, 1173
PstI	CTGCAG	1 cut(s)	1532
PsuI	RGATCY	2 cut(s)	53, 1387
RsaI	GTAC	2 cut(s)	661, 1715
RsaNI	GTAC	2 cut(s)	660, 1714
SacI	GAGCTC	2 cut(s)	354, 1773
SatI	GCNGC	6 cut(s)	321, 373, 376, 445, 959, 1528
Sau3AI	GATC	6 cut(s)	53, 642, 825, 1015, 1387, 1756
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	5 cut(s)	354, 421, 820, 1281, 1773
SfaNI	GCATC	2 cut(s)	1168, 1645
SfcI	CTRYAG	1 cut(s)	1528
SfuI	TTCGAA	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	1764
SmoI	CTYRAG	1 cut(s)	1764
SnaBI	TACGTA	1 cut(s)	1188
SsiI	CCGC	5 cut(s)	179, 277, 321, 375, 444
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	2 cut(s)	354, 1773
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	3 cut(s)	760, 1013, 1075
TaiI	ACGT	4 cut(s)	399, 875, 1190, 1715
TaqI	TCGA	6 cut(s)	168, 267, 402, 584, 595, 1669
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	3 cut(s)	323, 378, 447
TfiI	GAWTC	4 cut(s)	592, 863, 1096, 1874
TscAI	CASTG	2 cut(s)	161, 658
TseFI	GTSAC	1 cut(s)	1498
TseI	GCWGC	3 cut(s)	372, 958, 1527
Tsp45I	GTSAC	1 cut(s)	1498
TspRI	CASTG	2 cut(s)	161, 658
Van91I	CCANNNNNTGG	1 cut(s)	49
VspI	ATTAAT	3 cut(s)	678, 888, 1203
XapI	RAATTY	1 cut(s)	1856
XceI	RCATGY	1 cut(s)	631
XmaJI	CCTAGG	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.