Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

8067720 .. 8069624

Gene Structure 1905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGAAGCCCCACAAACTCCTAAACCCTCAGACCCTAAAACCCTACAAGCTCCGACCCACTTTCCCCACAAACCACCCTCCCTCCGCCGCACCTCTTTCTTCCGTCGCTCATCCAACCGCCCCCACAACCCCTCCTCCACCAATCACCCACCACACTCTCCTCACCTCCATCCATTCTTCTCAGTGGCATTTCATCGAACACCTTCCGCCCAACATTCCCCCGTCTCTAATCTCCGACGCCCTCTTCGACCTCCGCAAAAGCCCCGAACTTGTCCTCGAGTTCATCTCCCACTTCGAGTTTCACCGCCTCGATGTCGACACCCGCTGCCTCGCCATCGCCATTGTCGCCCAACCTTCCCCAAAACGCACTTTGGAGCTCCTGAAGCAAGTGGTTGGTAGTGGCAATGCTGGTGTTAGGGAGATTTTTGAGGCTTTGGCACTTTCGAGAGAGCGTTTGGGTGCAAAAAGTAGCCTCGGGTTTGATTTGCTGGCGCAGGCTTGCTGTGAAATGAATAGGGCTGATGACGCTCTTGAGTGTTTTTACTTGATGAAAGGCAAAGGTGTTTTGCCTAATAATTTGACGTGCAATGACATGTTGAATATGTTCTTGAAGATAAATCGAACGGATAGGGCTTGGGTTTTGTATGCCGAGATGTTTAGGTTGAAGATCAAGTCCAGCGTTTCTACCTTTAACATAATGATCAATGTGTTGTGTAAAGAAGGGAAGCTGAAAAAGGCAAAGGAGTTTGTTGGGTTTATGGAGACTTTAGGCATTCAGCCTAATGTTGTCACTTATAATACTATAATTCACAGATATTGTTCGATTGGGAGAGTTGGAGGGGCTCAGATGATCTTTTGTGCAATGAAAGGTAAAGGCGTTGAGCCGGATTCTTATACTTATGGTTCACTTATTAGCGGCATGTGCAAGGAAAGAAGACTTGAGGAAGCATCTGGGCTTTTCGATAAAATGCTGGAACTTGGGCTGGTTCCAACTGCTGTGACATATAACACCTTGATTGATGGTTATTGCAACAAAGGTGACCTGGACAAGGCTTTCGGTTATAGAGATGAGATGGTGAAGAAGGGTATACTGCCAACTGTGTCAACCTACAATATGTTGATTCATGCATTGTTAATGGAAGGAAAGATGGCTGAAGCTGATGATATGGTCAAAGAAATGAAGGATAAGGGCTTGGATCTTGATGCAATTACATATAATATCCTTATTAACGGCTATTGCAGAAGTGGGGATGCAAAGAAAGCCTTTAGCCTCCGTGATGAGATGTTGATTAAAAGGGTAGAGCCTACCAAGGTAACTTATACATCACTTATTTACGTTCTGAGTAGAAGGAAAAGAATGCAGGAGGCAGATGACTTGTTTAAGAAATTGCTGCGAAAGGGTATACTGCCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCACTGTGCTAATGGTAACATGGAGCGTGCATTTGCACTTTTGGAGGAGATGGATAAGATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGTTGCAGGGAGGGGAAAGTTGAGGAAGCCCGTCAACTTATGGAGGAGATGAAGAGAAGGGGAATTAAACCCGATCACATTAGTTTCAATACCCTCATTAGTGGTTACAGTAAAAGAGGTGATTTGAAGGATGCCTTTAAAGTTCGGGATGAGATGTTGAGTATAGGTTTCAATCCTACTGTTCTAACTTACAATGCCCTCATACAAGGCCTATGCAAAAACCAAGAAGGCGATCTTGCGGAACAGCTCCTGAAAGAAATGGTGAGCAGAGGCATCAGACCTAATGACAGCACATATTACTCTCTGATTGAGGGCATTGGGAATGTTGATGAATTTTTGAGGAAGGGTGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

635

Amino Acids

71.39

Weight (kDa)

8.55

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	165 - 281	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	190 - 239	1.7e-10	PPR repeat family
PPR_3	PF13812	214 - 272	2.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	224 - 254	7e-08	PPR repeat
PPR_2	PF13041	226 - 269	5e-12	PPR repeat family
PPR	PF01535	228 - 258	7.5e-06	PPR repeat
PPR_1	PF12854	257 - 289	1.5e-09	PPR repeat
PPR_2	PF13041	260 - 309	4.1e-18	PPR repeat family
PPR_long	PF17177	283 - 382	7.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	284 - 340	6.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	291 - 323	7.3e-12	PPR repeat
PPR	PF01535	298 - 328	8.6e-08	PPR repeat
PPR_2	PF13041	299 - 344	2.5e-14	PPR repeat family
PPR_3	PF13812	319 - 376	2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	327 - 359	4.7e-13	PPR repeat
PPR_2	PF13041	330 - 377	2e-17	PPR repeat family
PPR	PF01535	333 - 363	5.7e-10	PPR repeat
PPR_long	PF17177	357 - 443	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	365 - 414	8.3e-17	PPR repeat family
PPR	PF01535	368 - 398	6.3e-06	PPR repeat
PPR_long	PF17177	385 - 522	8.8e-12	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	386 - 496	1.3e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	390 - 447	4.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	396 - 428	1.3e-12	PPR repeat
PPR_2	PF13041	401 - 447	3.8e-15	PPR repeat family
PPR	PF01535	403 - 430	2.7e-08	PPR repeat
PPR_2	PF13041	438 - 472	1e-05	PPR repeat family
PPR	PF01535	438 - 468	9e-06	PPR repeat
PPR_3	PF13812	459 - 515	1.7e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	462 - 563	1.5e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	466 - 498	1.8e-11	PPR repeat
PPR_2	PF13041	470 - 518	1.3e-16	PPR repeat family
PPR	PF01535	473 - 502	4.2e-07	PPR repeat
PPR_long	PF17177	490 - 584	6.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	503 - 534	7.2e-12	PPR repeat
PPR_2	PF13041	505 - 551	3.1e-18	PPR repeat family
PPR	PF01535	508 - 538	2.9e-08	PPR repeat
TPR_24	PF23276	519 - 605	8.4e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	523 - 620	3.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	529 - 585	4.3e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	536 - 568	1.9e-11	PPR repeat
PPR_2	PF13041	540 - 589	4.6e-16	PPR repeat family
PPR	PF01535	543 - 573	1.7e-07	PPR repeat
PPR_1	PF12854	572 - 604	6e-09	PPR repeat
PPR_2	PF13041	575 - 622	1.8e-14	PPR repeat family
PPR	PF01535	579 - 608	2.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AccI	GTMKAC	3 cut(s)	315, 1087, 1402
AciI	CCGC	9 cut(s)	84, 87, 117, 206, 253, 304, 322, 915, 1787
AclWI	GGATC	2 cut(s)	1203, 1419
AcsI	RAATTY	1 cut(s)	1880
AcuI	CTGAAG	2 cut(s)	401, 1173
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	1048
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	7 cut(s)	598, 610, 664, 1426, 1636, 1675, 1720
AjiI	CACGTC	1 cut(s)	582
AjnI	CCWGG	1 cut(s)	1041
AluBI	AGCT	5 cut(s)	49, 376, 727, 1157, 1795
AluI	AGCT	5 cut(s)	49, 376, 727, 1157, 1795
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	228, 755
AlwI	GGATC	2 cut(s)	1203, 1419
AlwNI	CAGNNNCTG	1 cut(s)	1798
Ama87I	CYCGRG	2 cut(s)	275, 473
AoxI	GGCC	1 cut(s)	1756
ApeKI	GCWGC	2 cut(s)	324, 1390
ApoI	RAATTY	1 cut(s)	1880
ArsI	GACNNNNNNTTYG	4 cut(s)	227, 259, 1037, 1069
Asp700I	GAANNNNTTC	2 cut(s)	201, 602
AspLEI	GCGC	1 cut(s)	493
AsuHPI	GGTGA	7 cut(s)	136, 154, 293, 1049, 1087, 1679, 1822
AvaI	CYCGRG	2 cut(s)	275, 473
BanII	GRGCYC	2 cut(s)	378, 844
BbsI	GAAGAC	1 cut(s)	940
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	311, 1377
BccI	CCATC	7 cut(s)	176, 341, 1013, 1066, 1141, 1433, 1486
BceAI	ACGGC	1 cut(s)	1246
BciT130I	CCWGG	1 cut(s)	1043
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	228, 755
BisI	GCNGC	4 cut(s)	87, 325, 916, 1391
BlsI	GCNGC	4 cut(s)	88, 326, 917, 1392
Bme1390I	CCNGG	1 cut(s)	1043
BmeT110I	CYCGRG	2 cut(s)	275, 473
BmgBI	CACGTC	1 cut(s)	582
BmiI	GGNNCC	1 cut(s)	987
BmrFI	CCNGG	1 cut(s)	1043
BmsI	GCATC	5 cut(s)	956, 1192, 1240, 1669, 1830
BpiI	GAAGAC	1 cut(s)	940
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuEI	CTTGAG	2 cut(s)	551, 959
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	472, 1308
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 95, 115, 118, 145, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	1048
Bse3DI	GCAATG	3 cut(s)	409, 592, 867
BseBI	CCWGG	1 cut(s)	1043
BseDI	CCNNGG	2 cut(s)	472, 1308
BseGI	GGATG	6 cut(s)	109, 168, 1255, 1510, 1684, 1702
BseLI	CCNNNNNNNGG	1 cut(s)	1048
BseMI	GCAATG	3 cut(s)	409, 592, 867
BseMII	CTCAG	4 cut(s)	41, 194, 857, 1331
BseRI	GAGGAG	4 cut(s)	123, 149, 1502, 1607
BseXI	GCAGC	2 cut(s)	311, 1377
BshFI	GGCC	1 cut(s)	1758
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	2 cut(s)	275, 473
BsiSI	CCGG	2 cut(s)	884, 1409
BslI	CCNNNNNNNGG	1 cut(s)	1048
BsmAI	GTCTC	2 cut(s)	228, 755
BsmBI	CGTCTC	1 cut(s)	228
BsmI	GAATGC	2 cut(s)	771, 1362
BsnI	GGCC	1 cut(s)	1758
BsoBI	CYCGRG	2 cut(s)	275, 473
Bsp1286I	GDGCHC	2 cut(s)	378, 844
Bsp143I	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
BspACI	CCGC	9 cut(s)	84, 87, 117, 206, 253, 304, 322, 915, 1787
BspANI	GGCC	1 cut(s)	1758
BspCNI	CTCAG	4 cut(s)	40, 193, 856, 1332
BspHI	TCATGA	1 cut(s)	1901
BspLI	GGNNCC	1 cut(s)	987
BspPI	GGATC	2 cut(s)	1203, 1419
BsrDI	GCAATG	3 cut(s)	409, 592, 867
BssECI	CCNNGG	2 cut(s)	472, 1308
BssMI	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
BssNAI	GTATAC	2 cut(s)	1088, 1403
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	1308
Bst1107I	GTATAC	2 cut(s)	1088, 1403
Bst2UI	CCWGG	1 cut(s)	1043
Bst4CI	ACNGT	4 cut(s)	1099, 1448, 1658, 1729
Bst6I	CTCTTC	2 cut(s)	248, 1595
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	489, 495, 499, 1470
BstDEI	CTNAG	4 cut(s)	27, 180, 843, 1340
BstEII	GGTNACC	1 cut(s)	1037
BstENI	CCTNNNNNAGG	1 cut(s)	1046
BstF5I	GGATG	6 cut(s)	109, 168, 1255, 1510, 1684, 1702
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	7 cut(s)	669, 702, 852, 1198, 1414, 1624, 1783
BstMAI	GTCTC	2 cut(s)	228, 755
BstMBI	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 382, 524, 921, 1259
BstNI	CCWGG	1 cut(s)	1043
BstNSI	RCATGY	2 cut(s)	595, 922
BstPI	GGTNACC	1 cut(s)	1037
BstSCI	CCNGG	1 cut(s)	1041
BstV1I	GCAGC	2 cut(s)	311, 1377
BstV2I	GAAGAC	1 cut(s)	940
BstX2I	RGATCY	2 cut(s)	1195, 1411
BstYI	RGATCY	2 cut(s)	1195, 1411
BstZ17I	GTATAC	2 cut(s)	1088, 1403
BsuRI	GGCC	1 cut(s)	1758
BtgZI	GCGATG	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	582
BtsCI	GGATG	6 cut(s)	109, 168, 1255, 1510, 1684, 1702
BtsIMutI	CAGTG	2 cut(s)	188, 1444
Cac8I	GCNNGC	4 cut(s)	489, 495, 499, 1470
CaiI	CAGNNNCTG	1 cut(s)	1798
CciI	TCATGA	1 cut(s)	1901
CfoI	GCGC	1 cut(s)	493
CseI	GACGC	2 cut(s)	245, 533
CviAII	CATG	5 cut(s)	592, 919, 1124, 1462, 1902
DdeI	CTNAG	4 cut(s)	27, 180, 843, 1340
DpnI	GATC	7 cut(s)	668, 701, 851, 1197, 1413, 1623, 1782
DpnII	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
DraI	TTTAAA	1 cut(s)	1687
Eam1104I	CTCTTC	2 cut(s)	248, 1595
EarI	CTCTTC	2 cut(s)	248, 1595
EciI	GGCGGA	2 cut(s)	73, 195
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	1308
Eco147I	AGGCCT	1 cut(s)	1758
Eco24I	GRGCYC	2 cut(s)	378, 844
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	401, 1173
Eco88I	CYCGRG	2 cut(s)	275, 473
Eco91I	GGTNACC	1 cut(s)	1037
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1037
EcoRII	CCWGG	1 cut(s)	1041
EcoT14I	CCWWGG	1 cut(s)	1308
EcoT22I	ATGCAT	1 cut(s)	1129
EcoT38I	GRGCYC	2 cut(s)	378, 844
ErhI	CCWWGG	1 cut(s)	1308
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	5 cut(s)	595, 922, 1127, 1465, 1905
FalI	AAGNNNNNCTT	6 cut(s)	1247, 1279, 1667, 1699, 1767, 1799
FatI	CATG	5 cut(s)	591, 918, 1123, 1461, 1901
FauI	CCCGC	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	699
FblI	GTMKAC	3 cut(s)	315, 1087, 1402
Fnu4HI	GCNGC	4 cut(s)	87, 325, 916, 1391
FokI	GGATG	6 cut(s)	96, 155, 1262, 1497, 1691, 1709
FriOI	GRGCYC	2 cut(s)	378, 844
Fsp4HI	GCNGC	4 cut(s)	87, 325, 916, 1391
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	4 cut(s)	87, 325, 916, 1391
HaeIII	GGCC	1 cut(s)	1758
HapII	CCGG	2 cut(s)	884, 1409
HgaI	GACGC	2 cut(s)	245, 533
HhaI	GCGC	1 cut(s)	493
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	595, 922, 1127, 1465, 1905
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HincII	GTYRAC	3 cut(s)	316, 1104, 1583
HindII	GTYRAC	3 cut(s)	316, 1104, 1583
HinfI	GANTC	3 cut(s)	887, 1120, 1898
HpaII	CCGG	2 cut(s)	884, 1409
HphI	GGTGA	7 cut(s)	136, 154, 293, 1049, 1087, 1679, 1822
Hpy166II	GTNNAC	6 cut(s)	316, 905, 1088, 1104, 1403, 1583
Hpy188I	TCNGA	7 cut(s)	30, 53, 235, 846, 1341, 1826, 1854
Hpy188III	TCNNGA	9 cut(s)	379, 444, 530, 607, 1199, 1514, 1694, 1798, 1902
Hpy8I	GTNNAC	6 cut(s)	316, 905, 1088, 1104, 1403, 1583
Hpy99I	CGWCG	2 cut(s)	107, 239
HpyCH4III	ACNGT	4 cut(s)	1099, 1448, 1658, 1729
HpyCH4IV	ACGT	2 cut(s)	581, 1335
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 382, 524, 921, 1259
HpyF3I	CTNAG	4 cut(s)	27, 180, 843, 1340
HpySE526I	ACGT	2 cut(s)	581, 1335
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	595, 922, 1127, 1465, 1905
HspAI	GCGC	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
LmnI	GCTCC	5 cut(s)	54, 373, 381, 1465, 1800
Lsp1109I	GCAGC	2 cut(s)	311, 1377
LweI	GCATC	5 cut(s)	956, 1192, 1240, 1669, 1830
MaeII	ACGT	2 cut(s)	581, 1335
MaeIII	GTNAC	8 cut(s)	787, 997, 1037, 1312, 1442, 1457, 1522, 1652
MalI	GATC	7 cut(s)	668, 701, 851, 1197, 1413, 1623, 1782
MboI	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
MboII	GAAGA	8 cut(s)	90, 168, 235, 622, 676, 945, 1090, 1612
MflI	RGATCY	2 cut(s)	1195, 1411
MhlI	GDGCHC	2 cut(s)	378, 844
MluCI	AATT	6 cut(s)	574, 804, 1206, 1385, 1611, 1880
MmeI	TCCRAC	5 cut(s)	76, 137, 258, 814, 1013
Mph1103I	ATGCAT	1 cut(s)	1129
MroXI	GAANNNNTTC	2 cut(s)	201, 602
MseI	TTAA	7 cut(s)	690, 1133, 1227, 1290, 1380, 1614, 1686
MslI	CAYNNNNRTG	1 cut(s)	1515
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	2 cut(s)	884, 1409
MspR9I	CCNGG	1 cut(s)	1043
Mva1269I	GAATGC	2 cut(s)	771, 1362
MvaI	CCWGG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	5 cut(s)	344, 382, 524, 921, 1259
NdeII	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
NlaIII	CATG	5 cut(s)	595, 922, 1127, 1465, 1905
NlaIV	GGNNCC	1 cut(s)	987
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	5 cut(s)	787, 997, 1037, 1442, 1522
NsiI	ATGCAT	1 cut(s)	1129
NspI	RCATGY	2 cut(s)	595, 922
PaeR7I	CTCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	1901
PceI	AGGCCT	1 cut(s)	1758
PciI	ACATGT	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	2 cut(s)	771, 1362
PdmI	GAANNNNTTC	2 cut(s)	201, 602
PfeI	GAWTC	3 cut(s)	887, 1120, 1898
PkrI	GCNGC	4 cut(s)	88, 326, 917, 1392
PscI	ACATGT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	1041
PspEI	GGTNACC	1 cut(s)	1037
PspGI	CCWGG	1 cut(s)	1041
PspN4I	GGNNCC	1 cut(s)	987
PspXI	VCTCGAGB	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	1798
PsuI	RGATCY	2 cut(s)	1195, 1411
RseI	CAYNNNNRTG	1 cut(s)	1515
SacI	GAGCTC	1 cut(s)	378
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	7 cut(s)	690, 1133, 1227, 1290, 1380, 1614, 1686
SatI	GCNGC	4 cut(s)	87, 325, 916, 1391
Sau3AI	GATC	7 cut(s)	666, 699, 849, 1195, 1411, 1621, 1780
ScrFI	CCNGG	1 cut(s)	1043
SduI	GDGCHC	2 cut(s)	378, 844
SfaNI	GCATC	5 cut(s)	956, 1192, 1240, 1669, 1830
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	1515
SmlI	CTYRAG	3 cut(s)	275, 530, 938
SmoI	CTYRAG	3 cut(s)	275, 530, 938
Sse9I	AATT	6 cut(s)	574, 804, 1206, 1385, 1611, 1880
SseBI	AGGCCT	1 cut(s)	1758
SsiI	CCGC	9 cut(s)	84, 87, 117, 206, 253, 304, 322, 915, 1787
SstI	GAGCTC	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	1758
StyD4I	CCNGG	1 cut(s)	1041
StyI	CCWWGG	1 cut(s)	1308
TaaI	ACNGT	4 cut(s)	1099, 1448, 1658, 1729
TaiI	ACGT	2 cut(s)	584, 1338
TasI	AATT	6 cut(s)	574, 804, 1206, 1385, 1611, 1880
TauI	GCSGC	2 cut(s)	89, 918
TfiI	GAWTC	3 cut(s)	887, 1120, 1898
Tru1I	TTAA	7 cut(s)	690, 1133, 1227, 1290, 1380, 1614, 1686
Tru9I	TTAA	7 cut(s)	690, 1133, 1227, 1290, 1380, 1614, 1686
TscAI	CASTG	2 cut(s)	188, 1451
TseFI	GTSAC	5 cut(s)	787, 997, 1037, 1442, 1522
TseI	GCWGC	2 cut(s)	324, 1390
Tsp45I	GTSAC	5 cut(s)	787, 997, 1037, 1442, 1522
TspGWI	ACGGA	3 cut(s)	91, 638, 1262
TspRI	CASTG	2 cut(s)	188, 1451
XagI	CCTNNNNNAGG	1 cut(s)	1046
XapI	RAATTY	1 cut(s)	1880
XceI	RCATGY	2 cut(s)	595, 922
XhoI	CTCGAG	1 cut(s)	275
XmiI	GTMKAC	3 cut(s)	315, 1087, 1402
XmnI	GAANNNNTTC	2 cut(s)	201, 602
Zsp2I	ATGCAT	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.