Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

49142781 .. 49148976

Gene Structure 6196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAATGAGGCAGATGACTTGTTTGAGAGGATATTGTGTGAGGGTGTTCTGCCAGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCACTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCTCTGCAGGGAAGGGAAAGTTGAGGAAGCTCGGGAACTTCTGGATGAGATGAAGAAAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGACATGAATGATGCCTTCAAAGTTCGAGACGAGATGTTGAGTAGAGGTTTCAATCCTACACTTCTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

127

Amino Acids

14.56

Weight (kDa)

5.07

Isoelectric Point (pI)

10.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	6 - 76	2.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	13 - 63	1.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	15 - 46	6e-12	PPR repeat
PPR_2	PF13041	18 - 67	1.1e-19	PPR repeat family
PPR	PF01535	21 - 50	2e-08	PPR repeat
TPR_24	PF23276	21 - 112	2.1e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	51 - 82	1.4e-15	PPR repeat
PPR_2	PF13041	53 - 99	9.9e-21	PPR repeat family
PPR	PF01535	56 - 86	1.1e-12	PPR repeat
PPR_3	PF13812	77 - 127	7.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	84 - 116	6.6e-11	PPR repeat
PPR_2	PF13041	88 - 127	1.7e-11	PPR repeat family
PPR	PF01535	91 - 121	9.4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	70, 331, 364
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	195
BccI	CCATC	2 cut(s)	77, 130
BcoDI	GTCTC	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	196
BglII	AGATCT	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	313
BseGI	GGATG	2 cut(s)	154, 241
BsiHKCI	CYCGRG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	333
BsmBI	CGTCTC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	200
BssMI	GATC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	154, 241
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	154, 241
Cac8I	GCNNGC	1 cut(s)	114
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	3 cut(s)	193, 221, 262
CviKI_1	RGCY	3 cut(s)	193, 221, 262
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	319
FaiI	YATR	4 cut(s)	107, 300, 317, 382
FatI	CATG	1 cut(s)	315
FokI	GGATG	2 cut(s)	141, 248
FriOI	GRGCYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	296, 305
Hpy188III	TCNNGA	4 cut(s)	158, 224, 233, 338
Hpy8I	GTNNAC	2 cut(s)	296, 305
HpyAV	CCTTC	3 cut(s)	142, 197, 337
HpyCH4V	TGCA	3 cut(s)	116, 187, 198
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	66, 171, 184, 218, 276
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	3 cut(s)	166, 275, 311
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	255
MnlI	CCTC	7 cut(s)	21, 34, 123, 208, 296, 302, 350
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	159
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	166, 311
PstI	CTGCAG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	153, 223, 313, 361
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	337
TasI	AATT	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	166, 311
Tsp45I	GTSAC	2 cut(s)	166, 311
TspDTI	ATGAA	6 cut(s)	17, 143, 161, 177, 257, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.