Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003786.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

104321 .. 104938

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003786.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgaaagaagctaggaagcttgtcgaagagatgaatacgagaggtttcaagcctgacaagattacttatactacacttattgatggatgctgcaaagaaggagatttagaatcggccatagggataaggaaggagatgattaaagaagagattgcactcgacaatgtagctttcacagcccttatttcaggattttgcagagagggaagaatcatcgaggcagaaaaaatgttgagggagatgttaaaggccagcatgaagcctgatgatgccacttatacaatgctcattgatggtttttgcaaaacgggtgatgttaatattggttttaagttgctcaaggaaatgcagggtgatggtcatgtaccaagtgttgtgacctataatgtgcttatgaatggattatgcaagcaaggacagatgaaaaatgcaaatatgctgttgaatgctatgattaacgtgggggtggtgcccgatgatattacatacaacactctattagaaggacattgcaagcatggaaacccagatgactttgagaagctatggagtgagaaatcatttctcctcctccggaaggaattcgacttgatcaatatagagctggaccaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

205

Amino Acids

23.12

Weight (kDa)

5.12

Isoelectric Point (pI)

20.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	573
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	581
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	2 cut(s)	49, 445
AluBI	AGCT	5 cut(s)	11, 19, 170, 544, 604
AluI	AGCT	5 cut(s)	11, 19, 170, 544, 604
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	2 cut(s)	114, 249
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	323, 365
AvaII	GGWCC	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	3 cut(s)	77, 287, 350
BclI	TGATCA	1 cut(s)	591
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	2 cut(s)	77, 259
BpuEI	CTTGAG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	508
BseAI	TCCGGA	1 cut(s)	573
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	1 cut(s)	508
BseRI	GAGGAG	2 cut(s)	557, 560
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	116, 251
BshNI	GGYRCC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	116, 251
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp13I	TCCGGA	1 cut(s)	573
Bsp143I	GATC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	116, 251
BspEI	TCCGGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	508
BssMI	GATC	1 cut(s)	591
Bst6I	CTCTTC	2 cut(s)	21, 141
BstC8I	GCNNGC	3 cut(s)	253, 410, 515
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	594
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	116, 251
BtsCI	GGATG	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	253, 410, 515
Cfr13I	GGNCC	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	3 cut(s)	256, 362, 518
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	21, 141
EarI	CTCTTC	2 cut(s)	21, 141
Eco47I	GGWCC	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	581
FaeI	CATG	3 cut(s)	259, 365, 521
FatI	CATG	3 cut(s)	255, 361, 517
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	116, 251
HapII	CCGG	1 cut(s)	574
Hin1II	CATG	3 cut(s)	259, 365, 521
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	110, 210
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	2 cut(s)	323, 365
Hpy188III	TCNNGA	2 cut(s)	189, 574
HpyAV	CCTTC	4 cut(s)	92, 124, 497, 571
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	8 cut(s)	93, 155, 198, 303, 349, 408, 431, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	259, 365, 521
Kpn2I	TCCGGA	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	1 cut(s)	591
LpnPI	CCDG	8 cut(s)	66, 174, 265, 276, 335, 540, 587, 590
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	77, 259
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	3 cut(s)	38, 158, 219
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	1 cut(s)	581
MnlI	CCTC	6 cut(s)	35, 196, 211, 228, 578, 581
MroI	TCCGGA	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	5 cut(s)	141, 245, 318, 330, 456
MspI	CCGG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	259, 365, 521
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	376
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	110, 210
PkrI	GCNGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	607
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	5 cut(s)	141, 245, 318, 330, 456
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	1 cut(s)	607
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	8 cut(s)	13, 21, 46, 172, 383, 462, 546, 606
SfaNI	GCATC	2 cut(s)	77, 259
SinI	GGWCC	1 cut(s)	607
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	581
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	4 cut(s)	24, 159, 216, 585
TasI	AATT	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	110, 210
Tru1I	TTAA	5 cut(s)	141, 245, 318, 330, 456
Tru9I	TTAA	5 cut(s)	141, 245, 318, 330, 456
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	5 cut(s)	17, 47, 272, 410, 437
VpaK11BI	GGWCC	1 cut(s)	607
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.