Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

15523401 .. 15523700

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACGAGTGGAAATGTTATGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGTTGTGCAAAGAAGGCAAGTTGAACAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACTATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

99

Amino Acids

11.18

Weight (kDa)

9.84

Isoelectric Point (pI)

25.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	9 - 57	1.3e-11	PPR repeat family
PPR_3	PF13812	32 - 88	5.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	42 - 72	7.2e-10	PPR repeat
PPR_2	PF13041	44 - 91	4.1e-16	PPR repeat family
PPR	PF01535	47 - 76	1.2e-06	PPR repeat
PPR_1	PF12854	75 - 98	1.6e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AfaI	GTAC	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	70, 118, 184
AseI	ATTAAT	1 cut(s)	156
AspA2I	CCTAGG	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	24
BlnI	CCTAGG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	30, 297
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	106, 151, 263
CviJI	RGCY	3 cut(s)	86, 232, 296
CviKI_1	RGCY	3 cut(s)	86, 232, 296
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	30, 297
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	109, 154, 266
FaiI	YATR	7 cut(s)	20, 99, 107, 152, 212, 249, 264
FatI	CATG	3 cut(s)	105, 150, 262
FspBI	CTAG	1 cut(s)	24
Hin1II	CATG	3 cut(s)	109, 154, 266
HinfI	GANTC	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	30, 297
Hsp92II	CATG	3 cut(s)	109, 154, 266
Kzo9I	GATC	1 cut(s)	120
LpnPI	CCDG	1 cut(s)	142
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	130
MluCI	AATT	2 cut(s)	44, 65
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	75, 272, 284
MseI	TTAA	3 cut(s)	144, 156, 228
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	109, 154, 266
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	62
PagI	TCATGA	1 cut(s)	150
PciI	ACATGT	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	70
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	249
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	144, 156, 228
Sau3AI	GATC	1 cut(s)	120
SetI	ASST	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	62
Sse9I	AATT	2 cut(s)	44, 65
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	62, 73
TasI	AATT	2 cut(s)	44, 65
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	144, 156, 228
Tru9I	TTAA	3 cut(s)	144, 156, 228
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	57, 251
TspRI	CASTG	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	156
XceI	RCATGY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.