Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002968.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

168 .. 1236

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002968.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgaaagggagaggagttcagcccgattcttacatgtatggattgcttattagtgggatgtgtaaggagagaaggcttgatgaagcgtctggtctttttgataaaatgctggaaattgggctgcttccgagagtgttgttacttataacgccctggttgatggttattgcaatatgggtgatccggaattgggctttcggttatagagatgagatggtgaagaagggtataatgccgacggtgtcaacgtacaatttgttgtttcatggattgtttatggaaggtagggtgagtgaagctgattgtatggttagagaaatggaagagaagagaatggttcctgatgccatttcgtataatatgctgattaatggctcagcccaggtgctaagcagtttagcttattgtgatttggactcggaaatcaatcatctatggtacactcatttcgtggcaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

153

Amino Acids

17.63

Weight (kDa)

5.91

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	183
AclWI	GGATC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	251, 440
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	152, 381
AluBI	AGCT	2 cut(s)	299, 401
AluI	AGCT	2 cut(s)	299, 401
AlwI	GGATC	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	121
AseI	ATTAAT	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	190, 229, 301
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	154, 208
BciT130I	CCWGG	2 cut(s)	154, 383
BisI	GCNGC	1 cut(s)	122
BlpI	GCTNAGC	2 cut(s)	376, 389
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	154, 383
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	154, 383
BmsI	GCATC	1 cut(s)	334
Bpu1102I	GCTNAGC	2 cut(s)	376, 389
BsaJI	CCNNGG	2 cut(s)	152, 381
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	154, 383
BseDI	CCNNGG	2 cut(s)	152, 381
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	180
Bsp1720I	GCTNAGC	2 cut(s)	376, 389
BspCNI	CTCAG	1 cut(s)	389
BspEI	TCCGGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	152, 381
BssMI	GATC	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	154, 383
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	318, 323
BstDEI	CTNAG	2 cut(s)	376, 389
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstNI	CCWGG	2 cut(s)	154, 383
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	152, 381
BstV1I	GCAGC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	63
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	250, 439
CviAII	CATG	2 cut(s)	34, 266
CviJI	RGCY	8 cut(s)	22, 76, 121, 194, 299, 375, 380, 401
CviKI_1	RGCY	8 cut(s)	22, 76, 121, 194, 299, 375, 380, 401
CviQI	GTAC	2 cut(s)	250, 439
DdeI	CTNAG	2 cut(s)	376, 389
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	318, 323
EarI	CTCTTC	2 cut(s)	318, 323
EcoRII	CCWGG	2 cut(s)	152, 381
FaeI	CATG	2 cut(s)	37, 269
FatI	CATG	2 cut(s)	33, 265
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	37, 269
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	26, 416
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	3 cut(s)	190, 229, 301
Hpy166II	GTNNAC	2 cut(s)	246, 441
Hpy188I	TCNGA	2 cut(s)	129, 421
Hpy188III	TCNNGA	2 cut(s)	184, 341
Hpy8I	GTNNAC	2 cut(s)	246, 441
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	66, 217, 275
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	376, 389
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	37, 269
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	75, 95, 139, 166, 197, 354, 368, 395
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	232, 335, 340
MluCI	AATT	3 cut(s)	114, 187, 253
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	183
MseI	TTAA	1 cut(s)	369
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	154, 383
MvaI	CCWGG	2 cut(s)	154, 383
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	37, 269
NlaIV	GGNNCC	1 cut(s)	339
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PscI	ACATGT	1 cut(s)	33
PshBI	ATTAAT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	152, 381
PspGI	CCWGG	2 cut(s)	152, 381
PspN4I	GGNNCC	1 cut(s)	339
PsyI	GACNNNGTC	1 cut(s)	241
RsaI	GTAC	2 cut(s)	251, 440
RsaNI	GTAC	2 cut(s)	250, 439
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	154, 383
SetI	ASST	6 cut(s)	251, 286, 301, 387, 403, 461
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	3 cut(s)	114, 187, 253
StyD4I	CCNGG	2 cut(s)	152, 381
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	251
TasI	AATT	3 cut(s)	114, 187, 253
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	17, 96, 254
Tth111I	GACNNNGTC	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	369
XceI	RCATGY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.