Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

16151468 .. 16154172

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG104500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATAGTGGTGTTCTCGAACCCAAATTCTGGTTCTGGAAGATTCTTTTGGTTACTTCTTGAAGATGACCTGACAAGCTCAGCTCAGGTTCGTGGAGAATTGCCGCTTCAGAAGTGTAGAGCCACTTTGGATTCAGTGGAGTTCTCTGACAAGAGCTGGCTTCAAGCTTGGCAGATAGTGTTACTCAAATGTCTCAAGATGGATACAAAGGGTTTTGATGTCACTGTTAGTGGTAGGGATCATAATGCACAACATTCAGTTGCTTTAGTCAAATTGCGCGTTGCTATTACATACGGAGAAATATCTGGACACGCACAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

107

Amino Acids

11.92

Weight (kDa)

6.26

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	1 cut(s)	279
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	62, 164
AjuI	GAANNNNNNNTTGG	4 cut(s)	16, 31, 48, 63
AluBI	AGCT	4 cut(s)	78, 83, 156, 167
AluI	AGCT	4 cut(s)	78, 83, 156, 167
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	93, 98
Bsh1236I	CGCG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	92, 97
BspFNI	CGCG	1 cut(s)	279
BspPI	GGATC	1 cut(s)	246
BssMI	GATC	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	79, 84
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	141, 222
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	279
CviJI	RGCY	6 cut(s)	78, 83, 122, 156, 160, 167
CviKI_1	RGCY	6 cut(s)	78, 83, 122, 156, 160, 167
DdeI	CTNAG	2 cut(s)	79, 84
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	92
FaiI	YATR	2 cut(s)	243, 292
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	2 cut(s)	42, 131
Hpy188I	TCNGA	2 cut(s)	111, 148
Hpy188III	TCNNGA	5 cut(s)	16, 36, 59, 196, 306
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	79, 84
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	15, 21, 71, 83, 142, 291
MaeIII	GTNAC	3 cut(s)	51, 180, 220
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	51, 74
MluCI	AATT	3 cut(s)	25, 98, 272
MvnI	CGCG	1 cut(s)	279
NdeII	GATC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	42, 131
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	238
SetI	ASST	6 cut(s)	72, 80, 85, 90, 158, 169
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	25, 98, 272
SsiI	CCGC	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	25, 98, 272
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	42, 131
TscAI	CASTG	2 cut(s)	141, 229
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	141, 229
Van91I	CCANNNNNTGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.