Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

15712696 .. 15713635

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23386

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGAGTGGAAATGTTTTGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTTGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGAGATGTTTAGGTTGAAGATCAAGTCCAGTTTGAACAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGACTACTGTTGTTACTTACAATACTATCATTCCTGGGTTTTGTCTGAGAGGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATGAAAGGGAGAGGAGTTCAGCCAGATTCTTACACATATGGATTGGTTATTAATGGGATGTGTAAGGAGAGAAGACTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTTGGCTGCTTCCGAGTGCTGTTACTTATAACACATTGATTGACGGTTATTGCAATAACGGTGATCTAAACAGGGCTTTCGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGGGTGAAGCTGATTGTATGGTTCAAGAAATGGAAGAGAAGGAAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGGAATGCAAAGAAAGCATCTATCCTTCGCAATGAAATGTTGAGTAAAGGGATAGAACCCACTAAGGAAACTTATACATCGCTTTATGTTTTGAGTAAAAGGAAGAGAATGAATAAGGCAGATGACTTGTTTGAGAAGATACTGTGTAAGGGTGTTCTGCCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGGGTGCATTTTCACTTTTGAGGGAGATGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

296

Amino Acids

33.49

Weight (kDa)

8.56

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	55 - 107	3.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	59 - 91	4.5e-08	PPR repeat
PPR_2	PF13041	63 - 111	6.9e-16	PPR repeat family
PPR_long	PF17177	85 - 177	3.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	93 - 125	3e-11	PPR repeat
PPR	PF01535	100 - 127	4.6e-06	PPR repeat
PPR_1	PF12854	131 - 161	1.6e-11	PPR repeat
PPR_3	PF13812	131 - 177	8.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	132 - 179	1e-16	PPR repeat family
PPR	PF01535	135 - 165	1.3e-09	PPR repeat
PPR_3	PF13812	158 - 212	7.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	167 - 216	2.8e-13	PPR repeat family
PPR_1	PF12854	262 - 295	2.1e-11	PPR repeat
PPR_2	PF13041	266 - 296	5.5e-08	PPR repeat family
PPR	PF01535	269 - 296	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AclWI	GGATC	1 cut(s)	807
AcsI	RAATTY	1 cut(s)	381
AgsI	TTSAA	6 cut(s)	64, 70, 118, 136, 578, 814
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
AlwI	GGATC	1 cut(s)	807
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	381
AseI	ATTAAT	2 cut(s)	318, 633
Asp700I	GAANNNNTTC	1 cut(s)	600
AspA2I	CCTAGG	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	455, 493, 569
AvrII	CCTAGG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	472, 821, 874
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	389
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	598, 662
BpiI	GAAGAC	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	23, 215
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	23, 215
BseGI	GGATG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	3 cut(s)	93, 218, 263
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	120, 255, 445, 799
BspCNI	CTCAG	3 cut(s)	94, 219, 262
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	1 cut(s)	807
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	23, 215
BssMI	GATC	4 cut(s)	120, 255, 445, 799
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	5 cut(s)	190, 428, 443, 505, 780
Bst6I	CTCTTC	2 cut(s)	582, 734
BstBAI	YACGTR	1 cut(s)	618
BstDEI	CTNAG	5 cut(s)	30, 102, 227, 249, 699
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	4 cut(s)	123, 258, 448, 802
BstMBI	GATC	4 cut(s)	120, 255, 445, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSNI	TACGTA	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	330
CciI	TCATGA	1 cut(s)	529
CseI	GACGC	1 cut(s)	342
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	6 cut(s)	86, 248, 289, 388, 458, 563
CviKI_1	RGCY	6 cut(s)	86, 248, 289, 388, 458, 563
DdeI	CTNAG	5 cut(s)	30, 102, 227, 249, 699
DpnI	GATC	4 cut(s)	122, 257, 447, 801
DpnII	GATC	4 cut(s)	120, 255, 445, 799
Eam1104I	CTCTTC	2 cut(s)	582, 734
EarI	CTCTTC	2 cut(s)	582, 734
Eco105I	TACGTA	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	1 cut(s)	533
FatI	CATG	1 cut(s)	529
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	389
HapII	CCGG	1 cut(s)	797
HgaI	GACGC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	3 cut(s)	70, 293, 526
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	3 cut(s)	455, 493, 569
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	228, 252, 396
Hpy188III	TCNNGA	4 cut(s)	530, 578, 605, 628
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	4 cut(s)	481, 539, 586, 671
HpyCH4III	ACNGT	5 cut(s)	190, 428, 443, 505, 780
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	3 cut(s)	435, 644, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	5 cut(s)	30, 102, 227, 249, 699
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	4 cut(s)	120, 255, 445, 799
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	2 cut(s)	598, 662
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	193, 403
MalI	GATC	4 cut(s)	122, 257, 447, 801
MboI	GATC	4 cut(s)	120, 255, 445, 799
MboII	GAAGA	6 cut(s)	130, 351, 496, 599, 751, 784
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	5 cut(s)	44, 65, 381, 517, 533
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	75, 224, 236, 272, 847, 867
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	3 cut(s)	180, 318, 633
MspI	CCGG	1 cut(s)	797
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	650
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	4 cut(s)	120, 255, 445, 799
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	1 cut(s)	603
PagI	TCATGA	1 cut(s)	529
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	70, 293, 526
PflFI	GACNNNGTC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	618
PshBI	ATTAAT	2 cut(s)	318, 633
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	799
PsyI	GACNNNGTC	1 cut(s)	505
SaqAI	TTAA	3 cut(s)	180, 318, 633
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	4 cut(s)	120, 255, 445, 799
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	4 cut(s)	116, 550, 565, 620
SfaNI	GCATC	2 cut(s)	598, 662
SnaBI	TACGTA	1 cut(s)	618
Sse9I	AATT	5 cut(s)	44, 65, 381, 517, 533
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	5 cut(s)	190, 428, 443, 505, 780
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	73
TasI	AATT	5 cut(s)	44, 65, 381, 517, 533
TfiI	GAWTC	3 cut(s)	70, 293, 526
Tru1I	TTAA	3 cut(s)	180, 318, 633
Tru9I	TTAA	3 cut(s)	180, 318, 633
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	7 cut(s)	57, 284, 363, 518, 546, 684, 761
Tth111I	GACNNNGTC	1 cut(s)	505
VspI	ATTAAT	2 cut(s)	318, 633
XapI	RAATTY	1 cut(s)	381
XmaJI	CCTAGG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.