Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

79067532 .. 79068389

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0592700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGACTTCAATCGCAGAAGCACGAAAAGAGGGTCTTGGCCGAGAAAGAAAGCAAGTTCAAGCAGAGGAGCAGCAGCAACAACAACACCAAAAGCAAGTTTGTTGGGGTGAGACAAAGGCCGTCAGGGAAATGGGTGGCAGAGATCAAGGACACAACCAAGAAGATTAGAATGTGGCTTGGAACATTTGAAACTGCCGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCGTGCCTTCTTCGTGGTTCGAATACCAGAACCAACTTTACCAGTACTCATGTTCCTTCAAATTCTCCACTGTCTTTGAAAATCAAGAACCTCCTCAACCACAAAAAGAGCTTGAAACAACAAAGCCCTTCAACCCCCAACACCATAAAAACCACCCCTAAAGCTAGTACTAGAATTAGTAGTACTATTACCGATAACAATATTCAGAGTTCTAGTTACTACAATGCTAATTGCAGCTCTCTGCCTAGTTTCAAATCCCAGAACATTGAGGTCTCTGGTGATGCATATAGACCAGACCTCAGCCATTGCATTGGGGATCTTCAAGTACCGGCTATGTTCCACTTCGATCAACCATGGCAATTCTTAAGCGGGTTTGATCAGCTTCCGCATAACCATGAAGGGCTGTATTTAACAAAAGGCATTGCCACTGGAGTGTCACATAGTGCAGCAGAGCCAAATCAGCTGACAGAATTCGAACACGCAAAGATAGAAAGACAGATAACTTCTGCTTCATTTTATGCAATGAACGGAGTCAGCGAGTACTTGGAGACTGCATATGATGATGCAAGTGATGCCTTGTGGGATCTTCCTACTCTGTCTCAGTTGTTCTGCCTGGCCGATGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

285

Amino Acids

31.77

Weight (kDa)

8.25

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	32 - 82	1.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	597, 614
AclWI	GGATC	2 cut(s)	552, 819
AcoI	YGGCCR	2 cut(s)	39, 843
AcsI	RAATTY	2 cut(s)	289, 698
AdeI	CACNNNGTG	1 cut(s)	671
AfaI	GTAC	5 cut(s)	274, 397, 412, 555, 770
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	9 cut(s)	11, 61, 191, 288, 307, 343, 360, 481, 551
AjnI	CCWGG	1 cut(s)	840
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	8 cut(s)	206, 215, 227, 339, 392, 465, 610, 691
AluI	AGCT	8 cut(s)	206, 215, 227, 339, 392, 465, 610, 691
Alw26I	GTCTC	4 cut(s)	106, 505, 770, 831
AlwI	GGATC	2 cut(s)	552, 819
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	3 cut(s)	39, 119, 843
ApeKI	GCWGC	6 cut(s)	72, 75, 206, 227, 462, 674
ApoI	RAATTY	2 cut(s)	289, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AsuHPI	GGTGA	2 cut(s)	121, 518
AsuII	TTCGAA	2 cut(s)	248, 702
AvaI	CYCGRG	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	527
BbvI	GCAGC	6 cut(s)	84, 87, 193, 214, 474, 686
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	842
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	4 cut(s)	106, 505, 770, 831
BfaI	CTAG	4 cut(s)	393, 399, 441, 474
BfrI	CTTAAG	1 cut(s)	592
BisI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
BlsI	GCNGC	6 cut(s)	74, 77, 208, 229, 464, 676
BmcAI	AGTACT	4 cut(s)	274, 397, 412, 770
Bme1390I	CCNGG	1 cut(s)	842
BmeT110I	CYCGRG	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	4 cut(s)	499, 781, 790, 841
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	527
Bpu14I	TTCGAA	2 cut(s)	248, 702
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	198, 581
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	270, 661
Bse3DI	GCAATG	3 cut(s)	532, 648, 756
BseBI	CCWGG	1 cut(s)	842
BseDI	CCNNGG	2 cut(s)	198, 581
BseMI	GCAATG	3 cut(s)	532, 648, 756
BseMII	CTCAG	2 cut(s)	541, 842
BseNI	ACTGG	2 cut(s)	270, 661
BseRI	GAGGAG	2 cut(s)	82, 311
BseXI	GCAGC	6 cut(s)	84, 87, 193, 214, 474, 686
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	3 cut(s)	41, 121, 845
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	4 cut(s)	106, 505, 770, 831
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	41, 121, 845
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	2 cut(s)	248, 702
Bsp143I	GATC	5 cut(s)	144, 544, 574, 604, 811
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	2 cut(s)	597, 614
BspANI	GGCC	3 cut(s)	41, 121, 845
BspCNI	CTCAG	2 cut(s)	540, 841
BspPI	GGATC	2 cut(s)	552, 819
BspT104I	TTCGAA	2 cut(s)	248, 702
BspTI	CTTAAG	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	3 cut(s)	532, 648, 756
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	270, 661
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	2 cut(s)	198, 581
BssMI	GATC	5 cut(s)	144, 544, 574, 604, 811
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstBI	TTCGAA	2 cut(s)	248, 702
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	527, 828
BstDSI	CCRYGG	1 cut(s)	581
BstKTI	GATC	5 cut(s)	147, 547, 577, 607, 814
BstMAI	GTCTC	4 cut(s)	106, 505, 770, 831
BstMBI	GATC	5 cut(s)	144, 544, 574, 604, 811
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 212, 688, 800, 851
BstNI	CCWGG	1 cut(s)	842
BstSCI	CCNGG	1 cut(s)	840
BstV1I	GCAGC	6 cut(s)	84, 87, 193, 214, 474, 686
BstX2I	RGATCY	2 cut(s)	544, 811
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	2 cut(s)	544, 811
BsuRI	GGCC	3 cut(s)	41, 121, 845
BtgI	CCRYGG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	296, 654
Cac8I	GCNNGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	556
Csp6I	GTAC	5 cut(s)	273, 396, 411, 554, 769
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	3 cut(s)	278, 582, 623
CviQI	GTAC	5 cut(s)	273, 396, 411, 554, 769
DdeI	CTNAG	2 cut(s)	527, 828
DpnI	GATC	5 cut(s)	146, 546, 576, 606, 813
DpnII	GATC	5 cut(s)	144, 544, 574, 604, 811
DraIII	CACNNNGTG	1 cut(s)	671
EaeI	YGGCCR	2 cut(s)	39, 843
Eco130I	CCWWGG	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	840
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	3 cut(s)	281, 585, 626
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	277, 581, 622
FauI	CCCGC	1 cut(s)	590
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
Fsp4HI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
FspBI	CTAG	4 cut(s)	393, 399, 441, 474
GluI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	3 cut(s)	41, 121, 845
HapII	CCGG	1 cut(s)	557
Hin1II	CATG	3 cut(s)	281, 585, 626
HinfI	GANTC	1 cut(s)	759
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	121, 518
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	1 cut(s)	313
HpyAV	CCTTC	4 cut(s)	245, 294, 366, 620
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	7 cut(s)	462, 512, 537, 674, 749, 782, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 212, 688, 800, 851
HpyF3I	CTNAG	2 cut(s)	527, 828
Hsp92II	CATG	3 cut(s)	281, 585, 626
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	144, 544, 574, 604, 811
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	6 cut(s)	84, 87, 193, 214, 474, 686
LweI	GCATC	4 cut(s)	499, 781, 790, 841
MaeI	CTAG	4 cut(s)	393, 399, 441, 474
MaeIII	GTNAC	2 cut(s)	443, 663
MalI	GATC	5 cut(s)	146, 546, 576, 606, 813
MboI	GATC	5 cut(s)	144, 544, 574, 604, 811
MboII	GAAGA	4 cut(s)	175, 230, 539, 806
MflI	RGATCY	2 cut(s)	544, 811
MluCI	AATT	5 cut(s)	289, 402, 457, 587, 698
MlyI	GAGTC	1 cut(s)	768
MnlI	CCTC	7 cut(s)	24, 60, 193, 329, 332, 490, 536
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	2 cut(s)	593, 638
MslI	CAYNNNNRTG	2 cut(s)	621, 659
MspA1I	CMGCKG	1 cut(s)	691
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	842
MvaI	CCWGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	5 cut(s)	203, 212, 688, 800, 851
NcoI	CCATGG	1 cut(s)	581
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	5 cut(s)	144, 544, 574, 604, 811
NlaIII	CATG	3 cut(s)	281, 585, 626
NmeAIII	GCCGAG	2 cut(s)	67, 223
NmuCI	GTSAC	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	514
NspV	TTCGAA	2 cut(s)	248, 702
OliI	CACNNNNGTG	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PkrI	GCNGC	6 cut(s)	74, 77, 208, 229, 464, 676
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	840
PspGI	CCWGG	1 cut(s)	840
PspXI	VCTCGAGB	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PsuI	RGATCY	2 cut(s)	544, 811
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	5 cut(s)	274, 397, 412, 555, 770
RsaNI	GTAC	5 cut(s)	273, 396, 411, 554, 769
RseI	CAYNNNNRTG	2 cut(s)	621, 659
SaqAI	TTAA	2 cut(s)	593, 638
SatI	GCNGC	6 cut(s)	73, 76, 207, 228, 463, 675
Sau3AI	GATC	5 cut(s)	144, 544, 574, 604, 811
ScaI	AGTACT	4 cut(s)	274, 397, 412, 770
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	1 cut(s)	842
SfaNI	GCATC	4 cut(s)	499, 781, 790, 841
Sfr274I	CTCGAG	1 cut(s)	210
SfuI	TTCGAA	2 cut(s)	248, 702
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	621, 659
SmlI	CTYRAG	2 cut(s)	210, 592
SmoI	CTYRAG	2 cut(s)	210, 592
Sse9I	AATT	5 cut(s)	289, 402, 457, 587, 698
SsiI	CCGC	2 cut(s)	597, 614
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	4 cut(s)	393, 399, 441, 474
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	211, 248, 573, 702
TasI	AATT	5 cut(s)	289, 402, 457, 587, 698
TatI	WGTACW	4 cut(s)	272, 395, 410, 768
Tru1I	TTAA	2 cut(s)	593, 638
Tru9I	TTAA	2 cut(s)	593, 638
TscAI	CASTG	2 cut(s)	303, 661
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	6 cut(s)	72, 75, 206, 227, 462, 674
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	4 cut(s)	237, 639, 729, 767
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	2 cut(s)	303, 661
Vha464I	CTTAAG	1 cut(s)	592
XapI	RAATTY	2 cut(s)	289, 698
XhoI	CTCGAG	1 cut(s)	210
XspI	CTAG	4 cut(s)	393, 399, 441, 474
ZrmI	AGTACT	4 cut(s)	274, 397, 412, 770
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.