Rh6DG093200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000571
Physical Location & Seq
Reverse (-)
11162419 .. 11182292
19874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG093200.1

Sequence Viewer

Length: 168 bp
ATGGTTCATGGAGAATTGCTGCTTCAGAAGTGTAGAGCCTCTTTGGATTCAGTGAAGTTCTCCAACAAGAGCTGGCTCCAAGCTTGGCAGATAGTGTTACTCAAATGTCTCAAGATGCCTCTCGGTTTGGCAAAGCAGCTTCCCGGCACCTTCATTGAAAGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.21

Weight (kDa)

9.51

Isoelectric Point (pI)

60.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 8
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 3 cut(s) 72, 83, 139
AluI AGCT 3 cut(s) 72, 83, 139
Alw26I GTCTC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 19, 136
AsuC2I CCSGG 1 cut(s) 144
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 6, 148
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 2 cut(s) 20, 137
BlsI GCNGC 2 cut(s) 21, 138
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 77, 148
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 6, 148
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 77, 148
BspT107I GGYRCC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 6, 148
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 74
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 38, 72, 76, 83, 139
CviKI_1 RGCY 5 cut(s) 38, 72, 76, 83, 139
Eco57I CTGAAG 1 cut(s) 8
FaeI CATG 1 cut(s) 11
FaiI YATR 1 cut(s) 9
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 20, 137
Fsp4HI GCNGC 2 cut(s) 20, 137
GluI GCNGC 2 cut(s) 20, 137
HapII CCGG 1 cut(s) 144
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 160
Hsp92II CATG 1 cut(s) 11
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 58, 157
Lsp1109I GCAGC 2 cut(s) 6, 148
LweI GCATC 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 96
MluCI AATT 2 cut(s) 14, 163
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 49, 129
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 144
NciI CCSGG 1 cut(s) 144
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 77, 148
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 21, 138
PspN4I GGNNCC 2 cut(s) 77, 148
SatI GCNGC 2 cut(s) 20, 137
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 74, 85, 141, 152
SfaNI GCATC 1 cut(s) 105
SgeI CNNG 9 cut(s) 20, 79, 85, 92, 96, 124, 134, 155, 156
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 14, 163
StyD4I CCNGG 1 cut(s) 142
TasI AATT 2 cut(s) 14, 163
TfiI GAWTC 1 cut(s) 47
TscAI CASTG 1 cut(s) 57
TseI GCWGC 2 cut(s) 19, 136
TspDTI ATGAA 1 cut(s) 142
TspRI CASTG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.