Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

15529287 .. 15529790

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCTTTTATCCTTCGCAATGAAGTGCTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAGAGGAAGGGAATGAACGAGGCAGATGACTTGCTTGAGAAGATACTGCGTAAGGGTGTTCTGCCAGATCTTGTGATGCTCAATGCCTTGATTGATGGTCATTGTGCTAATGAGAATATGGAGTGTGCATTTTCGCTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGGAAGGGCGTTGCAGGGCAGGGAAAGTTGAGGAAGCTCGAGAACTCCTGGATGAGATGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

167

Amino Acids

18.98

Weight (kDa)

7.64

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	2 - 29	9.5e-11	PPR repeat
PPR_2	PF13041	3 - 51	5e-15	PPR repeat family
PPR_3	PF13812	3 - 52	5.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	6 - 36	1.2e-07	PPR repeat
TPR_24	PF23276	6 - 100	4.5e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	54 - 163	6.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	62 - 118	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	69 - 101	5.9e-09	PPR repeat
PPR_2	PF13041	73 - 122	5.2e-15	PPR repeat family
TPR_24	PF23276	79 - 166	2.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	96 - 153	1.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	106 - 137	9e-14	PPR repeat
PPR_2	PF13041	108 - 151	7.8e-17	PPR repeat family
PPR	PF01535	111 - 141	1.6e-09	PPR repeat
PPR_3	PF13812	132 - 167	3.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	139 - 167	5.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	2 cut(s)	71, 386
AluI	AGCT	2 cut(s)	71, 386
Ama87I	CYCGRG	1 cut(s)	387
AseI	ATTAAT	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	114
BccI	CCATC	2 cut(s)	242, 295
BciT130I	CCWGG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	219, 478
BpuEI	CTTGAG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	319, 406
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	91
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	95, 117
BstF5I	GGATG	2 cut(s)	319, 406
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstSNI	TACGTA	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	319, 406
BveI	ACCTGC	1 cut(s)	39
CviJI	RGCY	5 cut(s)	42, 71, 112, 386, 427
CviKI_1	RGCY	5 cut(s)	42, 71, 112, 386, 427
DdeI	CTNAG	2 cut(s)	95, 117
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco105I	TACGTA	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	114
FaiI	YATR	6 cut(s)	24, 129, 144, 272, 465, 482
FokI	GGATG	2 cut(s)	306, 413
FriOI	GRGCYC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	69
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	461, 470
Hpy188III	TCNNGA	4 cut(s)	8, 31, 323, 389
Hpy8I	GTNNAC	2 cut(s)	461, 470
HpyAV	CCTTC	6 cut(s)	89, 154, 307, 347, 408, 502
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	48, 62, 281, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	95, 117
HpySE526I	ACGT	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	220
LweI	GCATC	2 cut(s)	219, 478
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	331, 440
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	205, 421
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	420
MnlI	CCTC	6 cut(s)	150, 166, 288, 373, 461, 467
MseI	TTAA	2 cut(s)	36, 423
MslI	CAYNNNNRTG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	387
PctI	GAATGC	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	36, 423
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	23, 53, 73, 318, 388, 478
SfaNI	GCATC	2 cut(s)	219, 478
Sfr274I	CTCGAG	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	188, 387
SmoI	CTYRAG	2 cut(s)	188, 387
SnaBI	TACGTA	1 cut(s)	21
Sse9I	AATT	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	396
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	388
TasI	AATT	1 cut(s)	420
Tru1I	TTAA	2 cut(s)	36, 423
Tru9I	TTAA	2 cut(s)	36, 423
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	7 cut(s)	102, 182, 308, 326, 342, 422, 497
VspI	ATTAAT	1 cut(s)	36
XhoI	CTCGAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.