Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

57185248 .. 57187209

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

ATGAAATCTCACAAACTCCTAAACCCTCAGACCCTTAAACCCCAAAATCTCAGACCCATCCAAACCCAATCTCTCTGTTCACTCACCCAACCAGACCCTCCACCCATCACCCACCACTCTCTCCTCAACTCCATCCAAACTTCTCAGTGGCAATTCATCGAACACCTTCCGCTCAACCTTCCCTCCTCTCTAGTCTCCCAAACCCTCTTCCATCTCCACCAAAGCCCTCACCTTGTCCATCAATTCACATCCCACATCGACTTTCCCCGCCTCGAAATCGAAACCCAATGCCTCGCCGTCGCCATTCTCGCCGCCCTGCCTTCCCCAAAATCCTCCCTGGAGCTCCTGAAGCAACTCGTCGGCAGCGGCATTGCTCCGATTCGAGACGTTTTCGACTCGCTGGCTCGTGCCCGAGTGCGTTTGGGTGCGCAAAGCGGCGTCGTTTTGGACTTGCTGGTAAGTGCTTGCTGTGAATTGAAGAGGGCTGATGACGCTTTTGAGTGCTTTAGCTTGATGACGAGTGACAATGTTATGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGTTGTGCAAAGAAGGCAAGTTGAACAAGGCAAAGGAGTTTCTTGGATTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACTATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTTCTATGAAAGGGAGAGGAGTTCAGCCGGATTCTTACACATATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGGCTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTGGGTTGCTTCCGAGTGCTGTTACTTATAATACCCTGATTGATGGTTATTGCAATAAGGGTGATCTGGACAGGGGTTTCGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTGAAGCTGATTGTATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCGTTTATCCTTCACGATGAAATGCTGAGCAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTACCAGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGGAGATGGATAAAATGAAGGTTAATCCAGATGAAGTCACTTACAATACCCTAATGCAAGGGCGCTGCAGGACAGGGAAAGTTGAGGAAGCTCGGGAACTTCTGGATGAGATGAAGAGAAGAGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTCGAGACGAGATGTTGAGTAGAGGTTTCAATCCTACACTTCTAACGTACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCAAGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAAAAGGGCGATTCATGAAGTGGCTCTCTCCATGTATTGTACTTCTAATGATAGCGGTGTTCTCGAATGCAAATTCTGGTTCTGGAAGATTCCTTTGGTTACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

653

Amino Acids

73.84

Weight (kDa)

7.78

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	154 - 289	3.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	180 - 228	2.9e-10	PPR repeat family
PPR_3	PF13812	203 - 259	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	213 - 243	1.2e-08	PPR repeat
PPR_2	PF13041	215 - 262	1.2e-14	PPR repeat family
PPR_1	PF12854	246 - 278	1.3e-11	PPR repeat
PPR_2	PF13041	249 - 298	1.1e-17	PPR repeat family
PPR	PF01535	252 - 282	3.7e-06	PPR repeat
PPR_long	PF17177	272 - 364	3.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	273 - 332	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	280 - 312	2.3e-11	PPR repeat
PPR	PF01535	287 - 317	8.6e-07	PPR repeat
PPR_2	PF13041	292 - 326	3.3e-07	PPR repeat family
PPR_3	PF13812	308 - 363	5.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	316 - 348	2.2e-10	PPR repeat
PPR_2	PF13041	319 - 366	5.5e-15	PPR repeat family
PPR	PF01535	322 - 352	2.6e-08	PPR repeat
PPR_2	PF13041	354 - 403	8.7e-16	PPR repeat family
PPR_long	PF17177	374 - 437	5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	379 - 438	1e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	382 - 486	8.1e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	385 - 417	8.2e-13	PPR repeat
PPR_2	PF13041	389 - 437	2.7e-16	PPR repeat family
PPR	PF01535	392 - 422	2.2e-09	PPR repeat
PPR_long	PF17177	442 - 545	5.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	448 - 504	7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	455 - 487	3.3e-11	PPR repeat
TPR_24	PF23276	456 - 553	1.1e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	459 - 508	5.5e-17	PPR repeat family
PPR	PF01535	462 - 491	2.1e-07	PPR repeat
PPR_1	PF12854	492 - 523	1.6e-11	PPR repeat
PPR_2	PF13041	494 - 540	6.9e-18	PPR repeat family
PPR	PF01535	497 - 527	1e-08	PPR repeat
PPR_long	PF17177	513 - 609	9.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	518 - 575	3.3e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	525 - 557	7e-10	PPR repeat
PPR_2	PF13041	529 - 578	1.2e-17	PPR repeat family
PPR	PF01535	532 - 562	9.9e-08	PPR repeat
PPR_1	PF12854	560 - 593	1.3e-08	PPR repeat
PPR_2	PF13041	564 - 610	4.7e-13	PPR repeat family
PPR	PF01535	568 - 597	3.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	762, 972, 1718
Acc16I	TGCGCA	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	1197
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	6 cut(s)	170, 268, 312, 366, 435, 1908
AcsI	RAATTY	2 cut(s)	1847, 1925
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	3 cut(s)	652, 1706, 1894
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	7 cut(s)	478, 583, 631, 697, 1393, 1654, 1687
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	1 cut(s)	1931
AluBI	AGCT	5 cut(s)	343, 510, 1124, 1544, 1762
AluI	AGCT	5 cut(s)	343, 510, 1124, 1544, 1762
Alw21I	GWGCWC	2 cut(s)	345, 1764
Alw26I	GTCTC	3 cut(s)	199, 378, 1656
Ama87I	CYCGRG	2 cut(s)	411, 1545
ApeKI	GCWGC	2 cut(s)	363, 1518
ApoI	RAATTY	2 cut(s)	1847, 1925
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
AseI	ATTAAT	2 cut(s)	669, 1194
Asp700I	GAANNNNTTC	1 cut(s)	165
AspA2I	CCTAGG	1 cut(s)	536
AspLEI	GCGC	2 cut(s)	430, 1518
AsuHPI	GGTGA	9 cut(s)	76, 100, 221, 1016, 1054, 1126, 1646, 1757, 1789
AsuII	TTCGAA	1 cut(s)	575
AvaI	CYCGRG	2 cut(s)	411, 1545
AvrII	CCTAGG	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	4 cut(s)	345, 811, 1272, 1764
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	345, 1764
BbvI	GCAGC	2 cut(s)	375, 1505
BccI	CCATC	9 cut(s)	65, 113, 140, 219, 246, 980, 1033, 1400, 1453
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	199, 378, 1656
BfaI	CTAG	2 cut(s)	191, 537
BfmI	CTRYAG	1 cut(s)	1519
BfoI	RGCGCY	1 cut(s)	1519
BfuAI	ACCTGC	1 cut(s)	1197
BglII	AGATCT	1 cut(s)	1378
BisI	GCNGC	5 cut(s)	312, 364, 367, 436, 1519
BlnI	CCTAGG	1 cut(s)	536
BlpI	GCTNAGC	1 cut(s)	1253
BlsI	GCNGC	5 cut(s)	313, 365, 368, 437, 1520
Bme1390I	CCNGG	1 cut(s)	338
BmeT110I	CYCGRG	2 cut(s)	411, 1545
BmiI	GGNNCC	1 cut(s)	1164
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	1159, 1636
BpmI	CTGGAG	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	1253
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	1740
BsaAI	YACGTR	1 cut(s)	1179
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	336, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	336, 536
BseGI	GGATG	5 cut(s)	57, 132, 248, 891, 1564
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	5 cut(s)	41, 64, 158, 824, 1244
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	3 cut(s)	113, 175, 855
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	375, 1505
BsiHKAI	GWGCWC	2 cut(s)	345, 1764
BsiHKCI	CYCGRG	2 cut(s)	411, 1545
BsiSI	CCGG	1 cut(s)	851
BsmAI	GTCTC	3 cut(s)	199, 378, 1656
BsmBI	CGTCTC	2 cut(s)	378, 1656
BsmI	GAATGC	2 cut(s)	1222, 1925
BsoBI	CYCGRG	2 cut(s)	411, 1545
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	5 cut(s)	345, 412, 811, 1272, 1764
Bsp143I	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
Bsp1720I	GCTNAGC	1 cut(s)	1253
BspACI	CCGC	6 cut(s)	170, 268, 312, 366, 435, 1908
BspCNI	CTCAG	5 cut(s)	40, 63, 157, 823, 1245
BspHI	TCATGA	3 cut(s)	663, 1090, 1867
BspLI	GGNNCC	1 cut(s)	1164
BspMAI	CTGCAG	1 cut(s)	1523
BspMI	ACCTGC	1 cut(s)	1197
BspT104I	TTCGAA	1 cut(s)	575
BsrBI	CCGCTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	336, 536
BssMI	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
BssNI	GRCGYC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	751, 1066
Bst6I	CTCTTC	6 cut(s)	212, 473, 1143, 1313, 1562, 1567
BstACI	GRCGYC	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	1179
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	402, 466, 1437
BstDEI	CTNAG	7 cut(s)	27, 50, 144, 543, 810, 1253, 1275
BstF5I	GGATG	5 cut(s)	57, 132, 248, 891, 1564
BstH2I	RGCGCY	1 cut(s)	1519
BstHHI	GCGC	2 cut(s)	430, 1518
BstKTI	GATC	5 cut(s)	636, 819, 1009, 1381, 1750
BstMAI	GTCTC	3 cut(s)	199, 378, 1656
BstMBI	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
BstMWI	GCNNNNNNNGC	5 cut(s)	308, 349, 491, 687, 1226
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	1519
BstSLI	GKGCMC	1 cut(s)	412
BstSNI	TACGTA	1 cut(s)	1179
BstV1I	GCAGC	2 cut(s)	375, 1505
BstX2I	RGATCY	1 cut(s)	1378
BstYI	RGATCY	1 cut(s)	1378
BtsCI	GGATG	5 cut(s)	57, 132, 248, 891, 1564
BtsIMutI	CAGTG	2 cut(s)	152, 649
BveI	ACCTGC	1 cut(s)	1197
Cac8I	GCNNGC	3 cut(s)	402, 466, 1437
CciI	TCATGA	3 cut(s)	663, 1090, 1867
CfoI	GCGC	2 cut(s)	430, 1518
CseI	GACGC	3 cut(s)	427, 500, 903
Csp6I	GTAC	3 cut(s)	651, 1705, 1893
CviAII	CATG	6 cut(s)	619, 664, 776, 1091, 1868, 1885
CviQI	GTAC	3 cut(s)	651, 1705, 1893
DdeI	CTNAG	7 cut(s)	27, 50, 144, 543, 810, 1253, 1275
DpnI	GATC	5 cut(s)	635, 818, 1008, 1380, 1749
DpnII	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
Eam1104I	CTCTTC	6 cut(s)	212, 473, 1143, 1313, 1562, 1567
EarI	CTCTTC	6 cut(s)	212, 473, 1143, 1313, 1562, 1567
Ecl136II	GAGCTC	2 cut(s)	343, 1762
Eco105I	TACGTA	1 cut(s)	1179
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	4 cut(s)	345, 811, 1272, 1764
Eco53kI	GAGCTC	2 cut(s)	343, 1762
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	2 cut(s)	411, 1545
EcoICRI	GAGCTC	2 cut(s)	343, 1762
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	4 cut(s)	345, 811, 1272, 1764
ErhI	CCWWGG	1 cut(s)	536
Esp3I	CGTCTC	2 cut(s)	378, 1656
FaeI	CATG	6 cut(s)	622, 667, 779, 1094, 1871, 1888
FalI	AAGNNNNNCTT	4 cut(s)	1734, 1766, 1749, 1781
FatI	CATG	6 cut(s)	618, 663, 775, 1090, 1867, 1884
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	865
Fnu4HI	GCNGC	5 cut(s)	312, 364, 367, 436, 1519
FokI	GGATG	5 cut(s)	44, 119, 235, 898, 1571
FriOI	GRGCYC	4 cut(s)	345, 811, 1272, 1764
Fsp4HI	GCNGC	5 cut(s)	312, 364, 367, 436, 1519
FspBI	CTAG	2 cut(s)	191, 537
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	2 cut(s)	429, 1517
GluI	GCNGC	5 cut(s)	312, 364, 367, 436, 1519
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	1519
HapII	CCGG	1 cut(s)	851
HgaI	GACGC	3 cut(s)	427, 500, 903
HhaI	GCGC	2 cut(s)	430, 1518
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	622, 667, 779, 1094, 1871, 1888
Hin6I	GCGC	2 cut(s)	428, 1516
HinP1I	GCGC	2 cut(s)	428, 1516
HincII	GTYRAC	1 cut(s)	1071
HindII	GTYRAC	1 cut(s)	1071
HinfI	GANTC	7 cut(s)	379, 395, 583, 854, 1087, 1864, 1942
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	9 cut(s)	76, 100, 221, 1016, 1054, 1126, 1646, 1757, 1789
Hpy166II	GTNNAC	4 cut(s)	80, 1071, 1619, 1628
Hpy188I	TCNGA	6 cut(s)	30, 53, 378, 813, 957, 1821
Hpy8I	GTNNAC	4 cut(s)	80, 1071, 1619, 1628
Hpy99I	CGWCG	4 cut(s)	302, 362, 443, 1066
HpyCH4III	ACNGT	2 cut(s)	751, 1066
HpyCH4IV	ACGT	3 cut(s)	387, 1178, 1703
HpyCH4V	TGCA	9 cut(s)	681, 996, 1206, 1220, 1439, 1510, 1521, 1731, 1923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	308, 349, 491, 687, 1226
HpyF3I	CTNAG	7 cut(s)	27, 50, 144, 543, 810, 1253, 1275
HpySE526I	ACGT	3 cut(s)	387, 1178, 1703
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	6 cut(s)	622, 667, 779, 1094, 1871, 1888
HspAI	GCGC	2 cut(s)	428, 1516
Kzo9I	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
LmnI	GCTCC	5 cut(s)	340, 348, 379, 1432, 1767
Lsp1109I	GCAGC	2 cut(s)	375, 1505
LweI	GCATC	2 cut(s)	1159, 1636
MaeI	CTAG	2 cut(s)	191, 537
MaeII	ACGT	3 cut(s)	387, 1178, 1703
MaeIII	GTNAC	6 cut(s)	521, 754, 964, 1489, 1598, 1951
MalI	GATC	5 cut(s)	635, 818, 1008, 1380, 1749
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
MflI	RGATCY	1 cut(s)	1378
MhlI	GDGCHC	5 cut(s)	345, 412, 811, 1272, 1764
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	8 cut(s)	36, 657, 669, 741, 1194, 1476, 1581, 1767
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	338
Mva1269I	GAATGC	2 cut(s)	1222, 1925
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	5 cut(s)	308, 349, 491, 687, 1226
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
NlaIII	CATG	6 cut(s)	622, 667, 779, 1094, 1871, 1888
NlaIV	GGNNCC	1 cut(s)	1164
NmuCI	GTSAC	2 cut(s)	521, 1489
NsbI	TGCGCA	1 cut(s)	429
NspI	RCATGY	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	575
PagI	TCATGA	3 cut(s)	663, 1090, 1867
PciI	ACATGT	1 cut(s)	618
PctI	GAATGC	2 cut(s)	1222, 1925
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	6 cut(s)	379, 583, 854, 1087, 1864, 1942
PflFI	GACNNNGTC	1 cut(s)	1066
PkrI	GCNGC	5 cut(s)	313, 365, 368, 437, 1520
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	1179
PscI	ACATGT	1 cut(s)	618
PshBI	ATTAAT	2 cut(s)	669, 1194
PsiI	TTATAA	3 cut(s)	762, 972, 1718
Psp124BI	GAGCTC	2 cut(s)	345, 1764
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	1164
PstI	CTGCAG	1 cut(s)	1523
PsuI	RGATCY	1 cut(s)	1378
PsyI	GACNNNGTC	1 cut(s)	1066
RsaI	GTAC	3 cut(s)	652, 1706, 1894
RsaNI	GTAC	3 cut(s)	651, 1705, 1893
SacI	GAGCTC	2 cut(s)	345, 1764
SaqAI	TTAA	8 cut(s)	36, 657, 669, 741, 1194, 1476, 1581, 1767
SatI	GCNGC	5 cut(s)	312, 364, 367, 436, 1519
Sau3AI	GATC	5 cut(s)	633, 816, 1006, 1378, 1747
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	5 cut(s)	345, 412, 811, 1272, 1764
SfaNI	GCATC	2 cut(s)	1159, 1636
SfcI	CTRYAG	1 cut(s)	1519
SfuI	TTCGAA	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	1755
SmoI	CTYRAG	1 cut(s)	1755
SnaBI	TACGTA	1 cut(s)	1179
SsiI	CCGC	6 cut(s)	170, 268, 312, 366, 435, 1908
SspMI	CTAG	2 cut(s)	191, 537
SstI	GAGCTC	2 cut(s)	345, 1764
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	2 cut(s)	751, 1066
TaiI	ACGT	3 cut(s)	390, 1181, 1706
TatI	WGTACW	2 cut(s)	650, 1892
TauI	GCSGC	3 cut(s)	314, 369, 438
TfiI	GAWTC	6 cut(s)	379, 583, 854, 1087, 1864, 1942
Tru1I	TTAA	8 cut(s)	36, 657, 669, 741, 1194, 1476, 1581, 1767
Tru9I	TTAA	8 cut(s)	36, 657, 669, 741, 1194, 1476, 1581, 1767
TscAI	CASTG	2 cut(s)	152, 649
TseFI	GTSAC	2 cut(s)	521, 1489
TseI	GCWGC	2 cut(s)	363, 1518
Tsp45I	GTSAC	2 cut(s)	521, 1489
TspRI	CASTG	2 cut(s)	152, 649
Tth111I	GACNNNGTC	1 cut(s)	1066
VspI	ATTAAT	2 cut(s)	669, 1194
XapI	RAATTY	2 cut(s)	1847, 1925
XceI	RCATGY	1 cut(s)	622
XmaJI	CCTAGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	2 cut(s)	191, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.