Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

12918421 .. 12922940

Gene Structure 4520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACCTATAATACTATCATTCATGGGCTTTGTCTGAGAGGCAGAGTTGGAGGGGCTCAGATGATTTTTGGTGCTATGAGAGGTAGGGGAGTTCAGCCGGATTCTTACACATATGGATTGCTTATTGGTGGGATGTGTAAGGAAAGAAGACTTGATGAAGCGTCTGGTTTTTTTGATAAAATGCTGGAAATTGGGCTGCTTCCATGTGCTGTTACTTGTTTCACATTGATTGATGGTTATTGCAATAAGGGTGATCTGGACAGGGCTTTCGGTTATAGAGATGAGATGGTGAACAAGGGAAACTTATACATCGCTTATTTATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

7.55

Isoelectric Point (pI)

19.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 54	3.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	5 - 37	8.9e-12	PPR repeat
PPR_2	PF13041	8 - 57	4.9e-17	PPR repeat family
PPR	PF01535	11 - 41	2.3e-06	PPR repeat
PPR_1	PF12854	39 - 71	2.7e-11	PPR repeat
PPR	PF01535	46 - 76	9.9e-07	PPR repeat
PPR_2	PF13041	78 - 110	1.3e-06	PPR repeat family
PPR_1	PF12854	85 - 107	1.6e-06	PPR repeat
PPR	PF01535	85 - 110	9.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
ApeKI	GCWGC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AsuHPI	GGTGA	2 cut(s)	293, 331
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	257, 310
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	184
BseGI	GGATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	56, 101
BseXI	GCAGC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	57, 100
BssMI	GATC	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	65, 87
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	168
CseI	GACGC	1 cut(s)	180
CviAII	CATG	2 cut(s)	53, 234
CviJI	RGCY	6 cut(s)	22, 58, 86, 127, 226, 296
CviKI_1	RGCY	6 cut(s)	22, 58, 86, 127, 226, 296
DdeI	CTNAG	2 cut(s)	65, 87
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	2 cut(s)	56, 237
FaiI	YATR	9 cut(s)	39, 54, 107, 142, 144, 235, 306, 337, 352
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	2 cut(s)	52, 233
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	56, 237
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	293, 331
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	66, 90
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	273
HpyF3I	CTNAG	2 cut(s)	65, 87
Hsp92II	CATG	2 cut(s)	56, 237
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	5 cut(s)	141, 180, 200, 272, 277
Lsp1109I	GCAGC	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	31, 241
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	62, 74, 104
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	56, 237
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	2 cut(s)	38, 115
Sse9I	AATT	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	41, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.