Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

8877834 .. 8878364

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACCTGTTTAAGAAATTGCTGCGAAAGGGTTCTGCCGGATCTTGTGATGTTCGCCTTGATTGATGGTCACTGTGCTAATGGTACCATGGAGTGCGCATTTGCACTTTTGGAGACGATGGATAAGATGAAGGTCCATCCAGATGGAGTGAATTACAATACCCTAATGCAAGGGTGTTCCAGGGAGGGGAAAGTTGAGGAAGCCCGTCAACCAATGGAGGAGATGAAGAGAAGAGGAATTAAACCCGTTCACATTAGTTTTAATACCCTCATTAGTGGTTACAGTAAAAGAGGTGATTTGAAGGATGCCTTTAAGGTTCGCAATGAGATGTTGAGTATAGGTTTCAATCCTACAGTTCTAACTTACAATGCCCTCATACAAGGAATACGCAAAAACCCAGAAGGCGATCTTGCAGAAGAGCTCTTGAAAGAAATGGCGAGCAGAGGCATCAGACCTAATGACAACACATATTATTCTCTGATTGAGGGCATTGGGAATGTTGATGAATTTTTGAGGAAGGGCGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

177

Amino Acids

19.81

Weight (kDa)

5.97

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	29 - 126	2.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	36 - 96	6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	45 - 76	5.1e-06	PPR repeat
PPR_2	PF13041	47 - 82	6e-10	PPR repeat family
PPR	PF01535	51 - 80	7.8e-07	PPR repeat
TPR_24	PF23276	56 - 148	1.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	73 - 129	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	78 - 110	4.8e-10	PPR repeat
PPR_2	PF13041	85 - 129	5.2e-14	PPR repeat family
PPR	PF01535	85 - 115	3.5e-08	PPR repeat
PPR_2	PF13041	117 - 164	2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	97
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	506
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	301, 346, 427
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	506
Asp700I	GAANNNNTTC	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	4 cut(s)	59, 112, 137, 144
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	295, 456
BsaJI	CCNNGG	2 cut(s)	87, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	87, 180
BseGI	GGATG	2 cut(s)	136, 310
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	40, 406
Bsp19I	CCATGG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	87, 180
BssMI	GATC	2 cut(s)	40, 406
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	3 cut(s)	74, 284, 355
Bst6I	CTCTTC	3 cut(s)	221, 226, 411
BstC8I	GCNNGC	1 cut(s)	439
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	136, 310
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	43, 409
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	40, 406
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	136, 310
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	439
CciI	TCATGA	1 cut(s)	527
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	2 cut(s)	88, 528
CviJI	RGCY	2 cut(s)	203, 421
CviKI_1	RGCY	2 cut(s)	203, 421
CviQI	GTAC	1 cut(s)	84
DpnI	GATC	2 cut(s)	42, 408
DpnII	GATC	2 cut(s)	40, 406
Eam1104I	CTCTTC	3 cut(s)	221, 226, 411
EarI	CTCTTC	3 cut(s)	221, 226, 411
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	91, 531
FaiI	YATR	5 cut(s)	89, 338, 377, 469, 529
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 393, 425
FatI	CATG	2 cut(s)	87, 527
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	123, 317
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	22
FspAI	RTGCGCAY	1 cut(s)	97
FspI	TGCGCA	1 cut(s)	97
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	22
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	91, 531
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	209, 250
Hpy188I	TCNGA	2 cut(s)	452, 480
Hpy188III	TCNNGA	3 cut(s)	140, 424, 528
Hpy8I	GTNNAC	2 cut(s)	209, 250
HpyAV	CCTTC	4 cut(s)	124, 295, 395, 511
HpyCH4III	ACNGT	3 cut(s)	74, 284, 355
HpyCH4V	TGCA	3 cut(s)	104, 169, 413
Hsp92II	CATG	2 cut(s)	91, 531
HspAI	GCGC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	40, 406
LguI	GCTCTTC	1 cut(s)	411
LpnPI	CCDG	6 cut(s)	19, 51, 153, 166, 193, 411
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	2 cut(s)	295, 456
MaeIII	GTNAC	2 cut(s)	68, 278
MalI	GATC	2 cut(s)	42, 408
MboI	GATC	2 cut(s)	40, 406
MboII	GAAGA	3 cut(s)	238, 243, 428
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	4 cut(s)	16, 151, 237, 506
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	4 cut(s)	11, 240, 261, 312
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	40, 406
NlaIII	CATG	2 cut(s)	91, 531
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	68
NsbI	TGCGCA	1 cut(s)	97
PagI	TCATGA	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	11, 240, 261, 312
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	40, 406
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	7 cut(s)	8, 135, 295, 318, 343, 423, 457
SfaNI	GCATC	2 cut(s)	295, 456
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	16, 151, 237, 506
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	74, 284, 355
TasI	AATT	4 cut(s)	16, 151, 237, 506
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	4 cut(s)	11, 240, 261, 312
Tru9I	TTAA	4 cut(s)	11, 240, 261, 312
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	4 cut(s)	143, 239, 516, 519
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.