Rorug05G0359600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000571
Physical Location & Seq
Forward (+)
45678978 .. 45679762
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0359600.1

Sequence Viewer

Length: 573 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTACGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGCCAGCTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.92

Weight (kDa)

5.84

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 2 cut(s) 501, 510
AclWI GGATC 5 cut(s) 118, 131, 141, 330, 343
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 329, 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 3 cut(s) 92, 322, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 7, 199, 362, 535
AluI AGCT 4 cut(s) 7, 199, 362, 535
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 118, 131, 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 50, 293
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 407, 467
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 2 cut(s) 123, 335
BanII GRGCYC 2 cut(s) 262, 537
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 3 cut(s) 94, 324, 419
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 2 cut(s) 168, 550
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 419
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 4 cut(s) 102, 125, 245, 337
BmrFI CCNGG 4 cut(s) 55, 94, 324, 419
BmsI GCATC 2 cut(s) 480, 547
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 3 cut(s) 93, 179, 399
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 3 cut(s) 113, 282, 551
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 452
Bse1I ACTGG 3 cut(s) 205, 334, 376
BseBI CCWGG 3 cut(s) 94, 324, 419
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 37, 389
BseLI CCNNNNNNNGG 2 cut(s) 329, 452
BseMII CTCAG 1 cut(s) 550
BseNI ACTGG 3 cut(s) 205, 334, 376
BseRI GAGGAG 2 cut(s) 420, 423
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 62, 280
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 329, 452
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 262, 306, 537
Bsp143I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 501, 510
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 549
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 102, 125, 245, 337
BspPI GGATC 5 cut(s) 118, 131, 141, 330, 343
BsrI ACTGG 3 cut(s) 205, 334, 376
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 419
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 536, 570
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 37, 389
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 7 cut(s) 115, 126, 136, 189, 338, 346, 415
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
BstMWI GCNNNNNNNGC 2 cut(s) 507, 566
BstNI CCWGG 3 cut(s) 94, 324, 419
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 53, 92, 322, 417
BstSFI CTRYAG 2 cut(s) 168, 550
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 62, 280
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 4 cut(s) 123, 133, 186, 335
BstYI RGATCY 4 cut(s) 123, 133, 186, 335
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 37, 389
Cac8I GCNNGC 1 cut(s) 360
CciI TCATGA 1 cut(s) 474
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 327
CviAII CATG 6 cut(s) 215, 307, 448, 452, 475, 565
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 536, 570
DpnI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
DpnII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 537
Eco53kI GAGCTC 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 92, 322, 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 262, 537
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 218, 310, 451, 455, 478, 568
FaiI YATR 9 cut(s) 177, 210, 216, 308, 449, 453, 476, 507, 566
FatI CATG 6 cut(s) 214, 306, 447, 451, 474, 564
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 2 cut(s) 44, 376
FriOI GRGCYC 2 cut(s) 262, 537
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 51, 294
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 179, 399
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 162
Hin1II CATG 6 cut(s) 218, 310, 451, 455, 478, 568
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 407, 467
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 475
HpyAV CCTTC 1 cut(s) 443
HpyCH4V TGCA 4 cut(s) 285, 397, 451, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 566
HpyF3I CTNAG 2 cut(s) 536, 570
Hsp92II CATG 6 cut(s) 218, 310, 451, 455, 478, 568
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 62, 280
LweI GCATC 2 cut(s) 480, 547
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 154
MalI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 414
MboI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
MboII GAAGA 2 cut(s) 289, 490
MflI RGATCY 4 cut(s) 123, 133, 186, 335
MhlI GDGCHC 3 cut(s) 262, 306, 537
MluCI AATT 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 453
MroXI GAANNNNTTC 2 cut(s) 316, 432
MspA1I CMGCKG 2 cut(s) 199, 362
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 4 cut(s) 55, 94, 324, 419
MvaI CCWGG 3 cut(s) 94, 324, 419
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 507, 566
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
NlaIII CATG 6 cut(s) 218, 310, 451, 455, 478, 568
NlaIV GGNNCC 4 cut(s) 102, 125, 245, 337
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 474
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 316, 432
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 3 cut(s) 92, 322, 417
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 417
PspN4I GGNNCC 4 cut(s) 102, 125, 245, 337
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 4 cut(s) 123, 133, 186, 335
PvuII CAGCTG 2 cut(s) 199, 362
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 537
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 4 cut(s) 55, 94, 324, 419
SduI GDGCHC 3 cut(s) 262, 306, 537
SetI ASST 7 cut(s) 9, 98, 201, 284, 364, 499, 537
SfaNI GCATC 2 cut(s) 480, 547
SfcI CTRYAG 2 cut(s) 168, 550
Sfr274I CTCGAG 1 cut(s) 261
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 530
SmoI CTYRAG 4 cut(s) 128, 261, 297, 530
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 501, 510
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 53, 92, 322, 417
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 349
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 2 cut(s) 290, 491
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.