Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

21535726 .. 21536613

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTTATTGCAAATAAGGGTGATCTGGACAGGGCTTTTGGTTATAGAGATGAGATGGTGAAGAAGGGCATAATGCCGACGGTGTCAACTTACAATTTGTTGGTTCATGAATTATTTATAGAAGGTAGGCTGAGTGAGGCTGATTGTATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAACAAAGTGTTTATCCTTCGCGATGAAATGTTTAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTAATTATGTTTTGAGTAAAAGGAAGAGAATGAAAGAGGTAGATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGCAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACGTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTCAGGAAGCTCGGGAACTTCTGGATGAGATAAAGACAAGGGGAATTAAGTGTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCACGAGCTCCTTAAAGAAATGGTGAGCGGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGACGGAATTGAGAATGTTGAGGAATTTCTCAGAAAGGGCGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

266

Amino Acids

30.16

Weight (kDa)

5.68

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 38	5.4e-06	PPR repeat family
PPR_long	PF17177	8 - 107	5.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	26 - 75	8.9e-15	PPR repeat family
PPR_3	PF13812	51 - 104	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	57 - 89	1.6e-10	PPR repeat
PPR_2	PF13041	61 - 104	9.9e-14	PPR repeat family
PPR	PF01535	64 - 94	1.3e-07	PPR repeat
PPR_long	PF17177	113 - 211	1.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	120 - 176	3.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	127 - 159	2.2e-11	PPR repeat
PPR_2	PF13041	131 - 180	4.1e-17	PPR repeat family
TPR_24	PF23276	132 - 216	1.4e-07	Fungal tetratrico peptide repeats
PPR	PF01535	134 - 163	2.3e-07	PPR repeat
PPR_1	PF12854	164 - 194	3.2e-11	PPR repeat
PPR_2	PF13041	166 - 215	1.9e-15	PPR repeat family
PPR	PF01535	169 - 199	7e-07	PPR repeat
PPR_2	PF13041	216 - 252	3.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	708
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	773
AfaI	GTAC	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	2 cut(s)	560, 688
AluI	AGCT	2 cut(s)	560, 688
Alw21I	GWGCWC	1 cut(s)	690
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	1 cut(s)	773
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	32, 70, 683, 715
AvaI	CYCGRG	1 cut(s)	561
BanII	GRGCYC	2 cut(s)	288, 690
BauI	CACGAG	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	3 cut(s)	49, 416, 469
BfmI	CTRYAG	1 cut(s)	535
BfoI	RGCGCY	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	561
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	391
BseGI	GGATG	2 cut(s)	493, 580
BseMII	CTCAG	2 cut(s)	122, 793
BseXI	GCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	288, 690
Bsp143I	GATC	3 cut(s)	22, 394, 673
Bsp68I	TCGCGA	1 cut(s)	258
BspACI	CCGC	1 cut(s)	708
BspCNI	CTCAG	2 cut(s)	123, 792
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	2 cut(s)	106, 794
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	539
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	402
BsrBI	CCGCTC	1 cut(s)	708
BssMI	GATC	3 cut(s)	22, 394, 673
BssSI	CACGAG	1 cut(s)	683
Bst2BI	CACGAG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	159, 329
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	131, 291, 779
BstF5I	GGATG	2 cut(s)	493, 580
BstFNI	CGCG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	3 cut(s)	25, 397, 676
BstMBI	GATC	3 cut(s)	22, 394, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	535
BstSNI	TACGTA	1 cut(s)	195
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	493, 580
BtuMI	TCGCGA	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	453
CciI	TCATGA	2 cut(s)	106, 794
CfoI	GCGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	107, 795
CviJI	RGCY	7 cut(s)	35, 130, 140, 216, 286, 560, 688
CviKI_1	RGCY	7 cut(s)	35, 130, 140, 216, 286, 560, 688
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	3 cut(s)	131, 291, 779
DpnI	GATC	3 cut(s)	24, 396, 675
DpnII	GATC	3 cut(s)	22, 394, 673
Eam1104I	CTCTTC	2 cut(s)	159, 329
EarI	CTCTTC	2 cut(s)	159, 329
Ecl136II	GAGCTC	1 cut(s)	688
Eco105I	TACGTA	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	288, 690
Eco53kI	GAGCTC	1 cut(s)	688
Eco88I	CYCGRG	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	688
EcoT38I	GRGCYC	2 cut(s)	288, 690
FaeI	CATG	2 cut(s)	110, 798
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FatI	CATG	2 cut(s)	106, 794
Fnu4HI	GCNGC	1 cut(s)	535
FokI	GGATG	2 cut(s)	480, 587
FriOI	GRGCYC	2 cut(s)	288, 690
Fsp4HI	GCNGC	1 cut(s)	535
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	1 cut(s)	535
HaeII	RGCGCY	1 cut(s)	535
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	2 cut(s)	110, 798
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	791
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	4 cut(s)	32, 70, 683, 715
Hpy166II	GTNNAC	3 cut(s)	87, 635, 644
Hpy188I	TCNGA	2 cut(s)	747, 782
Hpy8I	GTNNAC	3 cut(s)	87, 635, 644
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	58, 116, 163, 263, 481, 662
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	194, 509
HpyCH4V	TGCA	7 cut(s)	11, 222, 236, 455, 526, 537, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	3 cut(s)	131, 291, 779
HpySE526I	ACGT	2 cut(s)	194, 509
Hsp92II	CATG	2 cut(s)	110, 798
HspAI	GCGC	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	22, 394, 673
LmnI	GCTCC	2 cut(s)	448, 693
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	2 cut(s)	194, 509
MaeIII	GTNAC	2 cut(s)	505, 614
MalI	GATC	3 cut(s)	24, 396, 675
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	3 cut(s)	22, 394, 673
MboII	GAAGA	4 cut(s)	73, 176, 346, 379
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	288, 690
MluCI	AATT	6 cut(s)	94, 110, 313, 594, 756, 773
MnlI	CCTC	6 cut(s)	130, 340, 462, 635, 704, 763
MseI	TTAA	4 cut(s)	210, 312, 597, 693
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	3 cut(s)	22, 394, 673
NlaIII	CATG	2 cut(s)	110, 798
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	505
NruI	TCGCGA	1 cut(s)	258
PagI	TCATGA	2 cut(s)	106, 794
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	791
PflFI	GACNNNGTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	394
PsyI	GACNNNGTC	1 cut(s)	82
RruI	TCGCGA	1 cut(s)	258
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	690
SaqAI	TTAA	4 cut(s)	210, 312, 597, 693
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	3 cut(s)	22, 394, 673
SduI	GDGCHC	2 cut(s)	288, 690
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	498
SnaBI	TACGTA	1 cut(s)	195
Sse9I	AATT	6 cut(s)	94, 110, 313, 594, 756, 773
SsiI	CCGC	1 cut(s)	708
SstI	GAGCTC	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	197, 512
TasI	AATT	6 cut(s)	94, 110, 313, 594, 756, 773
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	4 cut(s)	210, 312, 597, 693
Tru9I	TTAA	4 cut(s)	210, 312, 597, 693
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	8 cut(s)	95, 123, 276, 356, 482, 500, 516, 783
TspGWI	ACGGA	1 cut(s)	768
Tth111I	GACNNNGTC	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.