Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

57241747 .. 57246779

Gene Structure 5033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCACTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCGGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCCGCAGGGCGTGGAAAGTTGAGGAAGCTCGAGAACTCCCGGATGAGATGAAGAGAAAGGGAATTAAGCCCGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTAATATGAATGATGCCTTCAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCAAGGGCTCCTAAAAGACATGGTGAGCAGAGGGATTACTCCCGATGACAGACATATTACTCTCCAATTGAGGGAATTGAGAATGTTGAGGAATTTCTCGAAAGGGCAATTCATGAAGTCTCTCTCGCCGTGTTCGTGGAGAATTCTGAAGTGTAGAGCCTCTTTGGGTTTAGTGGAGTTCTCCAACAAGAGCTGGCTCCAAGCTTGGCATACAGTGTTACTCAAGATGGATATAAAGGGTTTTGATGTTACTGTTAGTGGTGGGGATCATAATGCACAACATTCAGTTGCTTTAGTCAAATTGATTGTTGCTATTACATACGGAGAAATATATGGAAATGCACAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

217

Amino Acids

24.72

Weight (kDa)

9.26

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	1 - 29	2.3e-07	PPR repeat
PPR_3	PF13812	1 - 42	7.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	2 - 43	6.4e-15	PPR repeat family
PPR_1	PF12854	2 - 25	1.3e-07	PPR repeat
TPR_24	PF23276	2 - 89	6.4e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	32 - 81	6.7e-15	PPR repeat family
PPR_1	PF12854	63 - 90	1.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	394, 444
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	7, 268
AluBI	AGCT	3 cut(s)	158, 495, 506
AluI	AGCT	3 cut(s)	158, 495, 506
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	394, 444
AspLEI	GCGC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	305, 337
AvaI	CYCGRG	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	312
BccI	CCATC	3 cut(s)	14, 67, 523
BceAI	ACGGC	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	133
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	131, 311, 500
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	250
BpuEI	CTTGAG	2 cut(s)	288, 509
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
BseAI	TCCGGA	1 cut(s)	94
BseGI	GGATG	3 cut(s)	91, 103, 178
BseLI	CCNNNNNNNGG	1 cut(s)	373
BshNI	GGYRCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	95, 170
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	295, 568
BspACI	CCGC	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	131, 311, 500
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	129
BssMI	GATC	2 cut(s)	295, 568
BssNI	GRCGYC	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	517, 556
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	51, 497
BstF5I	GGATG	3 cut(s)	91, 103, 178
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	298, 571
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	295, 568
BstSCI	CCNGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	91, 103, 178
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	51, 497
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	132
CviAII	CATG	2 cut(s)	322, 415
CviJI	RGCY	7 cut(s)	158, 199, 310, 461, 495, 499, 506
CviKI_1	RGCY	7 cut(s)	158, 199, 310, 461, 495, 499, 506
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	2 cut(s)	297, 570
DpnII	GATC	2 cut(s)	295, 568
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
FaeI	CATG	2 cut(s)	325, 418
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	2 cut(s)	321, 414
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	3 cut(s)	78, 110, 185
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	133
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	133
HapII	CCGG	2 cut(s)	95, 170
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	325, 418
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	504
HpaII	CCGG	2 cut(s)	95, 170
HphI	GGTGA	2 cut(s)	305, 337
Hpy166II	GTNNAC	2 cut(s)	233, 242
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	6 cut(s)	95, 161, 344, 400, 415, 526
Hpy8I	GTNNAC	2 cut(s)	233, 242
HpyAV	CCTTC	3 cut(s)	79, 274, 284
HpyCH4III	ACNGT	2 cut(s)	517, 556
HpyCH4V	TGCA	5 cut(s)	53, 124, 279, 578, 644
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	325, 418
HspAI	GCGC	1 cut(s)	130
KasI	GGCGCC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	295, 568
LmnI	GCTCC	3 cut(s)	46, 315, 504
LpnPI	CCDG	4 cut(s)	108, 121, 183, 481
LweI	GCATC	1 cut(s)	250
MaeIII	GTNAC	4 cut(s)	103, 212, 519, 550
MalI	GATC	2 cut(s)	297, 570
MboI	GATC	2 cut(s)	295, 568
MboII	GAAGA	1 cut(s)	193
MfeI	CAATTG	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	7 cut(s)	192, 368, 377, 394, 410, 444, 602
Mly113I	GGCGCC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	8 cut(s)	60, 145, 233, 239, 326, 366, 384, 472
MroI	TCCGGA	1 cut(s)	94
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	2 cut(s)	95, 170
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	368
NarI	GGCGCC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	295, 568
NlaIII	CATG	2 cut(s)	325, 418
NlaIV	GGNNCC	3 cut(s)	131, 311, 500
NmuCI	GTSAC	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	159
PagI	TCATGA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	134
PluTI	GGCGCC	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	131, 311, 500
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	295, 568
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	7 cut(s)	90, 160, 250, 274, 295, 497, 508
SfaNI	GCATC	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	3 cut(s)	159, 303, 524
SmoI	CTYRAG	3 cut(s)	159, 303, 524
Sse9I	AATT	7 cut(s)	192, 368, 377, 394, 410, 444, 602
SsiI	CCGC	1 cut(s)	133
SspDI	GGCGCC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	517, 556
TaqI	TCGA	2 cut(s)	160, 401
TasI	AATT	7 cut(s)	192, 368, 377, 394, 410, 444, 602
TauI	GCSGC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	7 cut(s)	80, 98, 114, 194, 269, 403, 431
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	522
XapI	RAATTY	2 cut(s)	394, 444
XhoI	CTCGAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.