Rh7AG375200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000571
Physical Location & Seq
Forward (+)
48611616 .. 48612356
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG375200.1

Sequence Viewer

Length: 291 bp
ATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCATGCATTTTCGCTTTTGAGGCAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACGTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.0

Weight (kDa)

8.98

Isoelectric Point (pI)

20.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 1 - 95 9.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 12 - 45 2.2e-06 PPR repeat family
PPR PF01535 12 - 41 2.3e-06 PPR repeat
PPR_3 PF13812 32 - 88 8.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 39 - 71 8.9e-12 PPR repeat
PPR_2 PF13041 43 - 92 4.3e-18 PPR repeat family
PPR PF01535 46 - 75 3.6e-08 PPR repeat
PPR_1 PF12854 76 - 96 5.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 138
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 145
AlwI GGATC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 152, 205
BfmI CTRYAG 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 127
BseGI GGATG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 275
BspPI GGATC 1 cut(s) 138
BssMI GATC 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 188
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 191
FaiI YATR 4 cut(s) 39, 54, 182, 189
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 271
GlaI GCGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 271
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HpaII CCGG 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 191, 262, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 4 cut(s) 141, 246, 259, 264
Lsp1109I GCAGC 1 cut(s) 257
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 82, 115
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 24
MnlI CCTC 2 cut(s) 76, 198
Mph1103I ATGCAT 1 cut(s) 193
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 191
PaeI GCATGC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 234
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 24
SetI ASST 2 cut(s) 228, 248
SfcI CTRYAG 1 cut(s) 271
SgeI CNNG 8 cut(s) 106, 140, 146, 163, 200, 245, 275, 286
SmiMI CAYNNNNRTG 1 cut(s) 234
SphI GCATGC 1 cut(s) 191
TaiI ACGT 1 cut(s) 248
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 92, 218, 236, 252
XceI RCATGY 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.