Rroxscaffold_7G00210730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000571
Physical Location & Seq
Reverse (-)
61197766 .. 61201617
3852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210730.1

Sequence Viewer

Length: 648 bp
ATGACCAACTTCCATCTTAAAGTTCAAAGTGCCGGTGGTTGGGTCTTGAAATACGTACTTCAACGCACAAATCACTATCATCGCCACCACCGACTCTTAGCACATGAAATTGCCTTTAAATTTAAATACTTGGAACAGCCCCCGACAATTGATGTTGCACCCTTTATGTCCAAGACAACTTCATTAGAGCAAGTCCACCCGTTGTCAAGAAATGTCAAGGTCAAAAAGTCAAGGGGTCGACTAGTCAAGAAACCGTTCATCGCCACGGACATGAGTTTCCACCCGTTCGTTCGTGGAGAATTGCCGCTTCAGAAGTGTAGAGCCTCTTTGGATTCAGTGGAGTGCTCCGACAAGAGCTGGCTTCAAGCTTGGCAGATAGTGTTACTCAAATGTCTCAAGATGCCCGACGGCTTCTTGAGAAGGGGTTATGGCTCGAGTCCGGCCTACGGATGGTTTTTGGCGACGACCACGGAAGAAATCTTGGGCTTAGTGGGCGGCGACACAACGCGGGTCGAGCGTTTCCGAGGCACCTCTTTGATCTCCATGATCGGCAACGTGATGGAGGGGCCGGACGGTGACGGCAACGTGCCGGATCGGACCGCATCGATCGGTTTTGACGTGGCTCGGTCGGGCTTCGTCGTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.16

Weight (kDa)

9.71

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 527
AccI GTMKAC 1 cut(s) 238
AccII CGCG 1 cut(s) 508
AciI CCGC 4 cut(s) 305, 495, 508, 600
AclWI GGATC 1 cut(s) 600
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 3 cut(s) 39, 446, 450
AgsI TTSAA 4 cut(s) 26, 49, 62, 365
AhlI ACTAGT 1 cut(s) 241
AjiI CACGTC 1 cut(s) 619
AluBI AGCT 2 cut(s) 357, 368
AluI AGCT 2 cut(s) 357, 368
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 1 cut(s) 600
Ama87I CYCGRG 1 cut(s) 433
AoxI GGCC 2 cut(s) 441, 566
ApoI RAATTY 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 566, 597
AsuHPI GGTGA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 1 cut(s) 597
BanI GGYRCC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 347
BccI CCATC 3 cut(s) 21, 444, 553
BceAI ACGGC 2 cut(s) 424, 595
BcoDI GTCTC 1 cut(s) 398
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 1 cut(s) 242
BisI GCNGC 2 cut(s) 305, 496
BlsI GCNGC 2 cut(s) 306, 497
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 566, 597
BmiI GGNNCC 2 cut(s) 529, 567
BmsI GCATC 2 cut(s) 390, 611
BpuEI CTTGAG 2 cut(s) 380, 436
Bsa29I ATCGAT 1 cut(s) 605
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 264, 468, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 446, 450
Bse118I RCCGGY 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 605
BseDI CCNNGG 3 cut(s) 264, 468, 523
BseGI GGATG 1 cut(s) 455
BseLI CCNNNNNNNGG 3 cut(s) 39, 446, 450
Bsh1236I CGCG 1 cut(s) 508
Bsh1285I CGRYCG 2 cut(s) 609, 629
BshFI GGCC 2 cut(s) 443, 568
BshNI GGYRCC 1 cut(s) 527
BshVI ATCGAT 1 cut(s) 605
BsiEI CGRYCG 2 cut(s) 609, 629
BsiHKAI GWGCWC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 4 cut(s) 33, 440, 569, 590
BslI CCNNNNNNNGG 3 cut(s) 39, 446, 450
BsmAI GTCTC 1 cut(s) 398
BsnI GGCC 2 cut(s) 443, 568
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 537, 546, 592, 606
BspACI CCGC 4 cut(s) 305, 495, 508, 600
BspANI GGCC 2 cut(s) 443, 568
BspDI ATCGAT 1 cut(s) 605
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 529, 567
BspPI GGATC 1 cut(s) 600
BspT107I GGYRCC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 264, 468, 523
BssMI GATC 4 cut(s) 537, 546, 592, 606
Bst4CI ACNGT 2 cut(s) 255, 575
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 97, 487
BstDSI CCRYGG 2 cut(s) 264, 468
BstF5I GGATG 1 cut(s) 455
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 4 cut(s) 540, 549, 595, 609
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 4 cut(s) 537, 546, 592, 606
BstMCI CGRYCG 2 cut(s) 609, 629
BstMWI GCNNNNNNNGC 2 cut(s) 492, 514
BstSNI TACGTA 1 cut(s) 55
BstUI CGCG 1 cut(s) 508
Bsu15I ATCGAT 1 cut(s) 605
BsuRI GGCC 2 cut(s) 443, 568
BsuTUI ATCGAT 1 cut(s) 605
BtgI CCRYGG 2 cut(s) 264, 468
BtgZI GCGATG 2 cut(s) 65, 244
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 455
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 566, 597
ClaI ATCGAT 1 cut(s) 605
CpoI CGGWCCG 1 cut(s) 597
Csp6I GTAC 1 cut(s) 56
CspI CGGWCCG 1 cut(s) 597
CviAII CATG 3 cut(s) 104, 271, 544
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 2 cut(s) 97, 487
DpnI GATC 4 cut(s) 539, 548, 594, 608
DpnII GATC 4 cut(s) 537, 546, 592, 606
DraI TTTAAA 2 cut(s) 118, 124
Eco105I TACGTA 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 433
FaeI CATG 3 cut(s) 107, 274, 547
FaiI YATR 5 cut(s) 105, 167, 272, 429, 545
FatI CATG 3 cut(s) 103, 270, 543
FauI CCCGC 1 cut(s) 501
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 305, 496
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 2 cut(s) 305, 496
FspBI CTAG 1 cut(s) 242
GluI GCNGC 2 cut(s) 305, 496
HaeIII GGCC 2 cut(s) 443, 568
HapII CCGG 4 cut(s) 33, 440, 569, 590
Hin1II CATG 3 cut(s) 107, 274, 547
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 3 cut(s) 93, 332, 436
HpaII CCGG 4 cut(s) 33, 440, 569, 590
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 2 cut(s) 196, 239
Hpy188I TCNGA 4 cut(s) 312, 349, 524, 597
Hpy188III TCNNGA 5 cut(s) 46, 207, 247, 397, 415
Hpy8I GTNNAC 2 cut(s) 196, 239
Hpy99I CGWCG 3 cut(s) 410, 466, 641
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 255, 575
HpyCH4IV ACGT 4 cut(s) 54, 555, 585, 618
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 492, 514
HpyF3I CTNAG 2 cut(s) 97, 487
HpySE526I ACGT 4 cut(s) 54, 555, 585, 618
Hsp92II CATG 3 cut(s) 107, 274, 547
Kzo9I GATC 4 cut(s) 537, 546, 592, 606
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 46, 343, 453, 582, 603
LweI GCATC 2 cut(s) 390, 611
MaeI CTAG 1 cut(s) 242
MaeII ACGT 4 cut(s) 54, 555, 585, 618
MaeIII GTNAC 2 cut(s) 381, 575
MalI GATC 4 cut(s) 539, 548, 594, 608
MboI GATC 4 cut(s) 537, 546, 592, 606
MboII GAAGA 1 cut(s) 485
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 4 cut(s) 108, 119, 147, 299
MlyI GAGTC 2 cut(s) 87, 445
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 4 cut(s) 334, 518, 541, 556
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 3 cut(s) 18, 117, 123
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 4 cut(s) 33, 440, 569, 590
MunI CAATTG 1 cut(s) 147
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 2 cut(s) 492, 514
NdeII GATC 4 cut(s) 537, 546, 592, 606
NlaIII CATG 3 cut(s) 107, 274, 547
NlaIV GGNNCC 2 cut(s) 529, 567
NmuCI GTSAC 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 433
PcsI WCGNNNNNNNCGW 2 cut(s) 88, 615
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 2 cut(s) 306, 497
Ple19I CGATCG 1 cut(s) 609
PleI GAGTC 2 cut(s) 87, 444
PpsI GAGTC 2 cut(s) 87, 444
Ppu21I YACGTR 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 529, 567
PspPI GGNCC 2 cut(s) 566, 597
PspXI VCTCGAGB 1 cut(s) 433
PvuI CGATCG 1 cut(s) 609
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 269
Rsr2I CGGWCCG 1 cut(s) 597
RsrII CGGWCCG 1 cut(s) 597
SalI GTCGAC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 18, 117, 123
SatI GCNGC 2 cut(s) 305, 496
Sau3AI GATC 4 cut(s) 537, 546, 592, 606
Sau96I GGNCC 2 cut(s) 566, 597
SchI GAGTC 2 cut(s) 87, 445
SduI GDGCHC 1 cut(s) 347
SetI ASST 8 cut(s) 57, 222, 359, 370, 533, 558, 588, 621
SfaNI GCATC 2 cut(s) 390, 611
Sfr274I CTCGAG 1 cut(s) 433
SinI GGWCC 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 433
SmiI ATTTAAAT 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 395, 415, 433
SmoI CTYRAG 3 cut(s) 395, 415, 433
SnaBI TACGTA 1 cut(s) 55
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 4 cut(s) 108, 119, 147, 299
SsiI CCGC 4 cut(s) 305, 495, 508, 600
SspMI CTAG 1 cut(s) 242
SwaI ATTTAAAT 1 cut(s) 124
TaaI ACNGT 2 cut(s) 255, 575
TaiI ACGT 4 cut(s) 57, 558, 588, 621
TaqI TCGA 4 cut(s) 238, 434, 513, 605
TaqII GACCGA 1 cut(s) 615
TasI AATT 4 cut(s) 108, 119, 147, 299
TauI GCSGC 2 cut(s) 307, 498
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 18, 117, 123
Tru9I TTAA 3 cut(s) 18, 117, 123
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 3 cut(s) 120, 171, 247
TspGWI ACGGA 3 cut(s) 281, 462, 485
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.